NC_057087.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_057087.1 Morus alba chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159290
Tables: 1
This is table 1 of 1 ( 38 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4964--4996 17 1.9 17 88 11 50 36 6 0 57 1.23
6835--6873 20 2.0 20 89 0 60 46 2 2 48 1.29
29928--29957 15 2.0 15 93 0 51 50 0 0 50 1.00
33267--33313 19 2.6 18 84 15 69 44 2 2 51 1.25
38256--38301 19 2.5 18 82 3 56 56 0 6 36 1.25
38329--38368 18 2.3 18 86 4 55 60 0 0 40 0.97
38443--38498 17 3.2 18 73 17 55 55 1 1 41 1.21
38610--38661 26 2.0 25 88 3 77 61 0 11 26 1.30
38646--38702 21 2.7 21 80 2 69 52 5 7 35 1.51
38723--38758 17 2.1 17 90 10 56 58 0 0 41 0.98
39122--39154 16 2.1 16 100 0 66 45 6 6 42 1.53
44976--45023 21 2.3 22 79 17 57 58 4 0 37 1.18
44995--45031 16 2.4 16 90 4 58 54 0 0 45 1.00
48955--48985 15 2.1 15 93 0 53 54 3 3 38 1.32
49288--49327 20 2.0 20 100 0 80 65 5 0 30 1.14
49803--49831 14 2.1 14 100 0 58 48 6 0 44 1.29
49766--49834 35 2.0 35 82 5 86 44 7 0 47 1.30
50237--50292 20 2.8 21 89 8 89 48 5 3 42 1.43
50237--50287 10 5.1 10 74 9 50 50 5 1 41 1.37
54527--54562 18 2.0 18 100 0 72 66 0 11 22 1.22
59869--59902 15 2.2 16 94 5 61 23 5 0 70 1.09
64603--64644 21 2.0 20 82 13 50 16 14 4 64 1.45
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
69081--69133 10 5.2 10 82 8 63 49 3 0 47 1.19
69115--69145 13 2.4 13 100 0 62 54 0 0 45 0.99
69095--69161 10 6.4 11 79 16 63 52 1 1 44 1.19
71690--71728 21 1.9 21 89 5 62 30 23 10 35 1.88
75499--75530 14 2.3 14 100 0 64 43 0 12 43 1.42
92884--92951 21 3.2 21 82 0 82 11 22 7 58 1.57
95310--95348 18 2.2 18 100 0 78 33 5 25 35 1.78
102464--102502 12 3.2 12 100 0 78 7 7 7 76 1.15
116887--116912 13 2.0 13 100 0 52 61 7 15 15 1.55
116926--116956 16 1.9 16 93 0 53 6 0 9 83 0.79
118184--118212 13 2.2 13 100 0 58 27 0 0 72 0.85
118399--118444 21 2.1 22 92 8 76 32 17 8 41 1.80
120302--120330 14 2.1 14 100 0 58 72 6 0 20 1.07
144854--144892 12 3.2 12 100 0 78 76 7 7 7 1.15
152008--152046 18 2.2 18 100 0 78 35 25 5 33 1.78
154406--154494 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!