NC_057091.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_057091.1 Alstonia scholaris chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154699
Tables: 1
This is table 1 of 1 ( 39 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4437--4463 14 1.9 14 100 0 54 51 7 11 29 1.64
8808--8844 18 2.1 18 100 0 74 56 0 21 21 1.42
15453--15479 11 2.5 11 100 0 54 7 14 0 77 0.97
16390--16422 17 2.0 16 94 5 57 18 15 0 66 1.25
42905--42929 10 2.5 10 100 0 50 52 0 0 48 1.00
45272--45302 15 2.1 15 93 0 53 61 3 19 16 1.48
46474--46500 13 2.1 13 100 0 54 22 0 0 77 0.76
46476--46518 13 3.1 14 86 6 52 30 0 2 67 1.03
46751--46779 14 2.1 14 100 0 58 24 13 6 55 1.63
47060--47091 16 2.0 16 93 0 55 37 6 15 40 1.73
47119--47150 17 1.9 17 93 6 57 37 6 6 50 1.53
51403--51441 19 2.1 19 95 0 69 23 7 0 69 1.14
51533--51565 14 2.3 14 94 5 57 63 0 9 27 1.24
52315--52355 9 4.8 9 79 8 50 43 0 2 53 1.13
52318--52364 17 2.9 17 84 9 64 42 0 4 53 1.20
53128--53168 16 2.6 16 100 0 82 29 7 17 46 1.74
62824--62887 31 2.1 31 96 0 119 45 17 3 34 1.64
68673--68704 16 1.9 17 93 6 57 25 15 6 53 1.65
72482--72514 8 4.1 8 85 14 50 72 0 0 27 0.85
72483--72514 16 1.9 17 93 6 57 71 0 0 28 0.86
80453--80501 24 2.0 24 84 0 62 26 32 14 26 1.94
81657--81691 16 2.3 16 90 9 56 5 5 0 88 0.63
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
83851--83887 16 2.3 16 95 0 65 21 0 0 78 0.75
83849--83887 9 4.6 9 84 12 55 20 0 0 79 0.73
90109--90163 24 2.5 22 85 8 67 14 23 12 49 1.78
90131--90198 21 3.2 21 77 8 75 11 22 8 57 1.61
92532--92571 18 2.2 18 95 0 71 32 7 25 35 1.84
108331--108393 31 2.0 31 93 0 108 42 20 9 26 1.83
108780--108808 14 2.1 14 100 0 58 48 10 13 27 1.75
111062--111103 13 3.3 13 83 9 52 69 0 4 26 1.08
112702--112740 20 2.0 20 85 10 53 56 23 0 20 1.42
113715--113744 15 1.9 16 93 6 53 73 0 6 20 1.05
114463--114496 17 2.0 17 100 0 68 35 17 0 47 1.48
114747--114783 18 2.1 18 100 0 74 62 0 21 16 1.33
127703--127760 27 2.1 28 84 9 75 1 22 5 70 1.16
131256--131284 14 2.1 14 100 0 58 27 13 10 48 1.75
131671--131733 31 2.0 31 93 0 108 26 9 20 42 1.83
147493--147532 18 2.2 18 95 0 71 35 25 7 32 1.84
149866--149955 21 4.1 22 75 8 76 54 10 23 12 1.67
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Tables: 1
The End!