NC_057196.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_057196.1 Ocimum gratissimum voucher MH178053 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152469
Tables: 1
This is table 1 of 1 ( 34 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6242--6266 12 2.1 12 100 0 50 44 0 16 40 1.47
7018--7048 16 1.9 16 100 0 62 61 0 19 19 1.35
12975--13026 17 3.1 17 100 0 104 51 11 11 25 1.71
27349--27390 10 4.1 10 84 6 57 38 4 7 50 1.51
27348--27389 21 2.0 21 100 0 84 38 4 9 47 1.57
27554--27585 15 2.1 15 94 0 55 40 15 6 37 1.73
30934--30969 19 1.9 18 94 5 63 36 5 16 41 1.72
41943--41971 13 2.2 13 100 0 58 55 0 6 37 1.27
54344--54372 13 2.2 13 100 0 58 37 6 13 41 1.72
58629--58659 16 1.9 16 93 0 53 29 16 16 38 1.90
59732--59777 21 2.2 21 100 0 92 28 26 15 30 1.96
63543--63580 19 2.0 19 100 0 76 52 0 21 26 1.47
67681--67721 21 2.0 21 95 0 73 29 26 9 34 1.88
76154--76186 16 2.1 16 100 0 66 27 6 24 42 1.78
83188--83222 17 2.1 17 100 0 70 22 5 11 60 1.52
88269--88323 24 2.5 22 85 8 67 14 23 12 49 1.78
88291--88358 21 3.2 21 77 8 75 11 22 10 55 1.65
90663--90752 18 5.2 17 92 4 94 31 8 24 35 1.86
90675--90752 18 4.3 18 95 0 138 30 10 25 33 1.89
98444--98474 15 2.1 15 100 0 62 32 6 12 48 1.67
98484--98514 11 2.8 11 95 0 53 32 6 16 45 1.72
98505--98541 17 2.2 16 86 13 56 29 0 24 45 1.53
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
106463--106523 31 2.0 31 93 0 104 40 21 9 27 1.85
122243--122274 10 3.0 11 90 9 57 46 0 9 43 1.35
125460--125500 11 3.5 12 84 12 50 0 21 2 75 0.92
129417--129477 31 2.0 31 93 0 104 27 9 21 40 1.85
137399--137433 17 2.0 18 94 5 63 48 22 0 28 1.51
137426--137456 11 2.8 11 95 0 53 45 16 6 32 1.72
137466--137496 15 2.1 15 100 0 62 48 12 6 32 1.67
137486--137529 23 1.9 23 85 0 61 59 6 6 27 1.49
145188--145265 18 4.3 18 95 0 138 33 25 10 30 1.89
145188--145277 18 5.2 17 92 4 94 35 24 8 31 1.86
147600--147653 21 2.6 21 82 11 74 59 11 20 9 1.59
147582--147671 21 4.1 22 75 8 67 53 11 23 12 1.70
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Tables: 1
The End!