NC_057235.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_057235.1 Vitex negundo chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 154438 Tables: 1 This is table 1 of 1 ( 32 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 4872--4909 20 1.9 21 89 10 62 73 0 15 10 1.09 27836--27861 13 2.0 13 100 0 52 46 7 7 38 1.61 32098--32130 17 1.9 17 100 0 66 45 6 0 48 1.27 32098--32136 19 2.2 19 90 9 55 46 5 0 48 1.24 47174--47210 12 3.2 12 96 3 67 43 0 0 56 0.99 53417--53456 17 2.3 18 86 4 55 17 5 2 75 1.10 55830--55866 17 2.2 17 100 0 74 24 10 5 59 1.52 60161--60192 13 2.3 15 89 10 50 62 3 9 25 1.40 60492--60534 17 2.6 16 81 3 50 51 9 2 37 1.47 61984--62022 19 2.1 19 100 0 78 28 15 5 51 1.64 69480--69510 15 2.1 15 100 0 62 12 19 19 48 1.81 87326--87385 20 3.0 20 95 0 102 46 6 21 25 1.75 89968--90022 24 2.5 22 85 8 67 14 23 12 49 1.78 89986--90039 21 2.6 21 82 11 74 9 20 11 59 1.59 92389--92478 18 5.2 18 94 4 141 31 7 25 35 1.84 92401--92477 9 8.6 9 72 0 64 31 9 27 32 1.88 100164--100198 14 2.4 14 90 4 52 34 0 14 51 1.42 100185--100219 17 2.0 18 94 5 63 28 0 22 48 1.51 108142--108202 31 2.0 31 96 0 113 39 22 9 27 1.86 112456--112494 20 2.0 20 85 10 53 56 23 2 17 1.53 113483--113510 14 2.0 14 100 0 56 71 7 7 14 1.29 114695--114720 12 2.2 12 100 0 52 50 7 7 34 1.60 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 115008--115033 12 2.2 12 100 0 52 30 0 7 61 1.24 127444--127478 14 2.5 14 85 0 52 2 14 5 77 1.07 131383--131443 31 2.0 31 96 0 113 27 9 22 39 1.86 139366--139415 17 3.1 17 86 13 63 48 20 0 32 1.50 139387--139421 14 2.4 14 90 4 52 51 14 0 34 1.42 147120--147183 9 7.1 9 74 0 65 34 28 6 31 1.82 147107--147196 18 5.2 18 94 4 141 35 25 7 31 1.84 149546--149599 21 2.6 21 82 11 74 59 11 20 9 1.59 149562--149617 24 2.5 22 85 8 60 50 12 23 14 1.77 152200--152259 20 3.0 20 95 0 102 25 21 6 46 1.75 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 The End!