NC_057235.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_057235.1 Vitex negundo chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154438
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4872--4909 20 1.9 21 89 10 62 73 0 15 10 1.09
27836--27861 13 2.0 13 100 0 52 46 7 7 38 1.61
32098--32130 17 1.9 17 100 0 66 45 6 0 48 1.27
32098--32136 19 2.2 19 90 9 55 46 5 0 48 1.24
47174--47210 12 3.2 12 96 3 67 43 0 0 56 0.99
53417--53456 17 2.3 18 86 4 55 17 5 2 75 1.10
55830--55866 17 2.2 17 100 0 74 24 10 5 59 1.52
60161--60192 13 2.3 15 89 10 50 62 3 9 25 1.40
60492--60534 17 2.6 16 81 3 50 51 9 2 37 1.47
61984--62022 19 2.1 19 100 0 78 28 15 5 51 1.64
69480--69510 15 2.1 15 100 0 62 12 19 19 48 1.81
87326--87385 20 3.0 20 95 0 102 46 6 21 25 1.75
89968--90022 24 2.5 22 85 8 67 14 23 12 49 1.78
89986--90039 21 2.6 21 82 11 74 9 20 11 59 1.59
92389--92478 18 5.2 18 94 4 141 31 7 25 35 1.84
92401--92477 9 8.6 9 72 0 64 31 9 27 32 1.88
100164--100198 14 2.4 14 90 4 52 34 0 14 51 1.42
100185--100219 17 2.0 18 94 5 63 28 0 22 48 1.51
108142--108202 31 2.0 31 96 0 113 39 22 9 27 1.86
112456--112494 20 2.0 20 85 10 53 56 23 2 17 1.53
113483--113510 14 2.0 14 100 0 56 71 7 7 14 1.29
114695--114720 12 2.2 12 100 0 52 50 7 7 34 1.60
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
115008--115033 12 2.2 12 100 0 52 30 0 7 61 1.24
127444--127478 14 2.5 14 85 0 52 2 14 5 77 1.07
131383--131443 31 2.0 31 96 0 113 27 9 22 39 1.86
139366--139415 17 3.1 17 86 13 63 48 20 0 32 1.50
139387--139421 14 2.4 14 90 4 52 51 14 0 34 1.42
147120--147183 9 7.1 9 74 0 65 34 28 6 31 1.82
147107--147196 18 5.2 18 94 4 141 35 25 7 31 1.84
149546--149599 21 2.6 21 82 11 74 59 11 20 9 1.59
149562--149617 24 2.5 22 85 8 60 50 12 23 14 1.77
152200--152259 20 3.0 20 95 0 102 25 21 6 46 1.75
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Tables: 1
The End!