NC_057235.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_057235.1 Vitex negundo chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  154438

    Tables:   1   

    This is table  1  of  1  ( 32 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  4872--4909                         20       1.9      21          89        10        62      73   0    15   10   1.09

  27836--27861                       13       2.0      13          100       0         52      46   7    7    38   1.61

  32098--32130                       17       1.9      17          100       0         66      45   6    0    48   1.27

  32098--32136                       19       2.2      19          90        9         55      46   5    0    48   1.24

  47174--47210                       12       3.2      12          96        3         67      43   0    0    56   0.99

  53417--53456                       17       2.3      18          86        4         55      17   5    2    75   1.10

  55830--55866                       17       2.2      17          100       0         74      24   10   5    59   1.52

  60161--60192                       13       2.3      15          89        10        50      62   3    9    25   1.40

  60492--60534                       17       2.6      16          81        3         50      51   9    2    37   1.47

  61984--62022                       19       2.1      19          100       0         78      28   15   5    51   1.64

  69480--69510                       15       2.1      15          100       0         62      12   19   19   48   1.81

  87326--87385                       20       3.0      20          95        0         102     46   6    21   25   1.75

  89968--90022                       24       2.5      22          85        8         67      14   23   12   49   1.78

  89986--90039                       21       2.6      21          82        11        74      9    20   11   59   1.59

  92389--92478                       18       5.2      18          94        4         141     31   7    25   35   1.84

  92401--92477                       9        8.6      9           72        0         64      31   9    27   32   1.88

  100164--100198                     14       2.4      14          90        4         52      34   0    14   51   1.42

  100185--100219                     17       2.0      18          94        5         63      28   0    22   48   1.51

  108142--108202                     31       2.0      31          96        0         113     39   22   9    27   1.86

  112456--112494                     20       2.0      20          85        10        53      56   23   2    17   1.53

  113483--113510                     14       2.0      14          100       0         56      71   7    7    14   1.29

  114695--114720                     12       2.2      12          100       0         52      50   7    7    34   1.60

  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  115008--115033                     12       2.2      12          100       0         52      30   0    7    61   1.24

  127444--127478                     14       2.5      14          85        0         52      2    14   5    77   1.07

  131383--131443                     31       2.0      31          96        0         113     27   9    22   39   1.86

  139366--139415                     17       3.1      17          86        13        63      48   20   0    32   1.50

  139387--139421                     14       2.4      14          90        4         52      51   14   0    34   1.42

  147120--147183                     9        7.1      9           74        0         65      34   28   6    31   1.82

  147107--147196                     18       5.2      18          94        4         141     35   25   7    31   1.84

  149546--149599                     21       2.6      21          82        11        74      59   11   20   9    1.59

  149562--149617                     24       2.5      22          85        8         60      50   12   23   14   1.77

  152200--152259                     20       3.0      20          95        0         102     25   21   6    46   1.75
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!