NC_057560.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_057560.1 Cucumis melo chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155402
Tables: 1
This is table 1 of 1 ( 33 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
23530--23560 15 2.1 15 100 0 62 45 12 0 41 1.42
29772--29807 17 2.1 17 89 0 54 44 2 13 38 1.59
30119--30165 18 2.7 18 83 3 60 42 21 8 27 1.81
33037--33068 16 2.0 16 100 0 64 12 6 0 81 0.87
34447--34505 25 2.4 25 88 5 84 44 10 8 37 1.69
44646--44687 18 2.3 18 95 0 75 85 0 4 9 0.72
48302--48355 27 2.0 27 100 0 108 37 7 0 55 1.28
49656--49691 18 2.0 18 94 0 63 30 2 0 66 1.06
50553--50597 23 2.0 21 83 8 54 46 0 20 33 1.51
58551--58588 19 2.0 19 100 0 76 36 10 26 26 1.89
67398--67434 17 2.2 17 95 0 65 37 2 5 54 1.38
69893--69931 21 1.9 21 89 5 62 33 25 7 33 1.84
91024--91079 24 2.5 24 85 8 73 14 17 14 53 1.73
91044--91112 21 3.3 21 81 2 77 11 21 8 57 1.60
93460--93534 18 4.2 18 96 0 141 32 5 28 34 1.80
93460--93534 9 8.3 9 74 0 69 32 5 28 34 1.80
100881--100910 6 5.2 6 92 8 53 33 0 16 50 1.46
100881--100914 11 3.1 11 91 8 52 32 0 17 50 1.47
108928--108993 32 2.1 32 97 0 123 40 24 9 25 1.84
111192--111247 18 3.1 18 87 12 71 39 12 10 37 1.78
114899--114952 22 2.5 22 87 0 72 37 0 0 62 0.95
115457--115496 20 2.0 20 100 0 80 65 5 0 30 1.14
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
121974--122009 18 2.0 18 100 0 72 61 5 5 27 1.41
128210--128251 21 2.0 21 86 9 59 35 4 4 54 1.42
130443--130498 18 3.1 19 87 12 82 37 10 12 39 1.78
132697--132762 32 2.1 32 97 0 123 25 9 24 40 1.84
140780--140809 6 5.2 6 92 8 53 50 16 0 33 1.46
140776--140809 11 3.1 11 91 8 52 50 17 0 32 1.47
140780--140814 17 2.1 17 88 0 52 51 14 2 31 1.57
148156--148230 18 4.2 18 96 0 141 34 28 5 32 1.80
148156--148230 9 8.3 9 74 0 69 34 28 5 32 1.80
150595--150646 21 2.5 21 87 0 77 59 11 19 9 1.59
150610--150666 24 2.5 22 86 8 71 54 14 17 14 1.71
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Tables: 1
The End!