NC_057592.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_057592.1 Stauntonia chinensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157819
Tables: 1
This is table 1 of 1 ( 31 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
33100--33138 13 2.8 13 84 7 51 46 7 5 41 1.55
33357--33391 17 2.1 17 100 0 70 54 5 5 34 1.48
34252--34302 21 2.5 20 84 6 59 74 3 13 7 1.18
48819--48864 11 4.2 11 88 0 74 58 0 0 41 0.98
48825--48871 22 2.1 22 100 0 94 55 0 0 44 0.99
48890--48921 16 2.0 16 93 0 55 31 6 9 53 1.58
56752--56777 13 2.0 13 100 0 52 38 0 15 46 1.46
58812--58854 20 2.1 21 91 4 70 44 0 6 48 1.29
60868--60902 17 2.1 17 100 0 70 28 11 0 60 1.32
60925--60949 12 2.1 12 100 0 50 76 0 0 24 0.80
65700--65741 21 2.0 21 100 0 84 33 0 9 57 1.31
69545--69571 13 2.1 13 100 0 54 62 14 14 7 1.51
69637--69667 14 2.2 14 94 0 53 45 0 16 38 1.47
70071--70103 13 2.5 14 85 14 52 57 6 0 36 1.23
81557--81602 24 1.9 24 95 0 83 28 28 13 30 1.94
84373--84403 15 2.1 15 100 0 62 25 12 0 61 1.32
84493--84532 20 2.0 20 100 0 80 50 0 5 45 1.23
91362--91450 21 4.1 21 91 5 126 13 24 10 51 1.71
95844--95877 17 2.0 17 100 0 68 41 17 11 29 1.85
101122--101170 19 2.6 19 93 3 82 44 10 4 40 1.57
111128--111157 14 2.1 14 100 0 60 60 13 13 13 1.60
111581--111615 17 2.1 17 100 0 70 48 11 11 28 1.74
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
112824--112876 29 2.0 28 82 14 67 66 3 7 22 1.34
115895--115929 17 2.1 17 88 0 52 48 2 20 28 1.63
120778--120818 17 2.3 18 91 4 66 34 12 4 48 1.62
130623--130664 21 2.0 21 90 9 68 28 11 16 42 1.84
132750--132784 17 2.1 17 100 0 70 28 11 11 48 1.74
133208--133237 14 2.1 14 100 0 60 13 13 13 60 1.60
143195--143243 19 2.6 19 93 3 82 40 4 10 44 1.57
148488--148521 17 2.0 17 100 0 68 29 11 17 41 1.85
152915--153003 21 4.1 21 91 5 126 51 10 24 13 1.71
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!