NC_057593.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_057593.1 Gardenia jasminoides chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  154921

    Tables:   1   

    This is table  1  of  1  ( 22 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  4187--4216                         11       2.7      11          100       0         60      80   0    0    20   0.72

  4187--4246                         11       4.8      13          84        8         56      68   1    3    26   1.15

  4933--4961                         14       2.1      14          100       0         58      65   6    6    20   1.40

  6364--6405                         19       2.3      19          87        4         59      61   7    0    30   1.22

  9236--9270                         12       2.7      13          91        8         54      45   0    0    54   0.99

  10188--10219                       17       1.9      17          93        6         57      40   6    0    53   1.26

  32105--32143                       17       2.2      18          86        4         53      43   5    2    48   1.38

  32402--32435                       14       2.5      14          95        4         61      26   0    14   58   1.36

  45605--45643                       20       2.0      20          100       0         78      46   10   2    41   1.51

  47332--47367                       17       2.0      19          89        10        58      38   0    16   44   1.48

  61870--61897                       14       2.0      14          100       0         56      35   7    14   42   1.73

  70966--70999                       17       2.0      17          100       0         68      47   0    5    47   1.26

  72405--72431                       12       2.2      12          100       0         54      77   0    0    22   0.76

  76459--76491                       16       2.1      16          94        0         57      60   12   3    24   1.46

  83293--83318                       13       2.0      13          100       0         52      30   15   7    46   1.74

  90043--90110                       21       3.2      21          77        8         75      11   22   8    57   1.61

  92471--92510                       18       2.2      18          95        0         71      32   7    25   35   1.84

  99814--99843                       13       2.4      13          94        5         53      30   6    0    63   1.20

  140321--140350                     13       2.4      13          94        5         53      63   0    6    30   1.20

  147654--147693                     18       2.2      18          95        0         71      35   25   7    32   1.84

  150072--150125                     21       2.6      21          82        11        74      59   11   20   9    1.59

  150055--150124                     21       3.4      19          72        16        59      57   8    22   11   1.61
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!