NC_057640.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_057640.1 Bupleurum scorzonerifolium voucher 00031288 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 178668
Tables: 1
This is table 1 of 1 ( 49 repeats found )
Click on indices to view alignment
Table Explanation
----------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4616--4650 12 3.0 12 91 4 54 68 8 11 11 1.39
7509--7539 13 2.5 12 90 10 53 45 19 0 35 1.51
10570--10597 13 2.2 13 100 0 56 46 14 0 39 1.44
13824--13875 20 2.5 21 87 3 70 40 0 0 59 0.97
13845--13877 13 2.5 14 90 9 52 36 0 0 63 0.95
21387--21484 49 2.0 49 85 0 133 30 15 23 30 1.95
28306--28334 9 3.0 10 90 10 51 10 31 10 48 1.71
29234--29266 16 2.1 16 94 0 57 33 9 12 45 1.73
33468--33506 15 2.4 17 83 16 64 43 5 5 46 1.48
37810--37929 60 2.0 60 100 0 240 46 16 18 18 1.84
45974--46014 19 2.2 19 100 0 82 34 7 14 43 1.73
46583--46641 28 2.1 28 100 0 118 32 10 10 47 1.71
47644--47716 15 4.6 16 78 11 71 35 9 0 54 1.33
47650--47713 27 2.6 25 81 16 73 35 9 0 54 1.33
47679--47716 17 2.2 17 100 0 76 36 5 0 57 1.21
49743--49785 21 2.0 21 100 0 86 53 4 0 41 1.21
49934--49972 19 2.1 19 100 0 78 33 15 10 41 1.81
52101--52131 15 2.1 15 100 0 62 38 0 0 61 0.96
52938--52968 15 2.1 15 100 0 62 32 0 25 41 1.56
60542--60574 16 2.0 17 88 5 50 45 3 9 42 1.51
65157--65187 2 16.0 2 93 6 55 51 0 0 48 1.00
69551--69591 21 2.0 21 90 0 64 29 24 9 36 1.87
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
77072--77099 14 2.0 14 100 0 56 0 28 7 64 1.20
89930--89997 21 3.2 21 77 8 75 11 22 8 57 1.61
91104--91148 15 3.0 15 96 0 81 26 33 15 24 1.95
92374--92426 9 5.9 9 72 0 52 30 3 28 37 1.75
92381--92439 18 3.3 18 95 0 100 30 6 28 33 1.83
100299--100344 23 2.0 23 86 0 65 26 8 6 58 1.52
102406--102461 27 2.2 24 84 12 67 39 10 8 41 1.71
111398--111604 111 1.9 111 98 0 405 21 28 28 21 1.98
111593--111634 21 2.0 21 95 0 75 21 50 4 23 1.68
111835--111886 25 2.2 23 89 6 77 38 0 13 48 1.43
111825--111898 35 2.1 36 87 9 109 39 0 12 48 1.41
111837--111902 12 5.7 12 74 18 59 36 0 13 50 1.42
119921--119986 32 2.1 32 97 0 123 40 24 9 25 1.84
125120--125163 20 2.2 20 88 8 63 54 29 0 15 1.42
127218--127249 16 2.0 16 100 0 64 37 6 18 37 1.76
144408--144473 32 2.1 32 97 0 123 25 9 24 40 1.84
152492--152557 12 5.7 12 74 18 59 50 13 0 36 1.42
152508--152559 25 2.2 23 89 6 77 48 13 0 38 1.43
152496--152569 33 2.1 35 87 9 107 48 12 0 39 1.41
152760--152801 21 2.0 21 95 0 75 23 4 50 21 1.68
152790--152996 111 1.9 111 98 0 405 21 28 28 21 1.98
164050--164095 23 2.0 23 86 0 65 58 6 8 26 1.52
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
171955--172013 18 3.3 18 95 0 100 33 28 6 30 1.83
171968--172020 9 5.9 9 72 0 52 37 28 3 30 1.75
173246--173290 15 3.0 15 96 0 81 24 15 33 26 1.95
174415--174468 21 2.6 21 82 11 74 59 11 20 9 1.59
174398--174467 21 3.4 19 72 16 59 57 8 22 11 1.61
----------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!