NC_057955.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_057955.1 Salvadora persica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153379
Tables: 1
This is table 1 of 1 ( 39 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3606--3647 21 2.0 21 100 0 84 47 14 14 23 1.80
4455--4592 69 2.0 70 92 5 237 38 5 8 47 1.56
4757--4781 13 1.9 13 100 0 50 48 16 16 20 1.82
5286--5334 23 2.2 22 85 7 64 22 24 0 53 1.47
9105--9137 16 2.1 16 100 0 66 45 30 0 24 1.53
9183--9221 16 2.5 16 87 4 53 69 5 17 7 1.32
12523--12556 16 2.2 15 94 5 59 50 5 5 38 1.51
21931--21955 13 1.9 13 100 0 50 48 8 4 40 1.51
26816--26854 19 2.0 20 95 5 71 25 0 5 69 1.09
31264--31300 16 2.4 16 86 4 58 40 10 2 45 1.53
32217--32619 205 2.0 205 98 0 788 39 11 20 28 1.88
36091--36122 16 2.1 15 94 5 55 59 9 0 31 1.29
36187--36225 19 2.1 19 95 0 69 38 2 0 58 1.12
36190--36232 19 2.3 19 87 0 59 39 2 4 53 1.34
44525--44565 20 2.0 21 95 4 75 19 14 0 65 1.26
44525--44564 19 2.0 20 90 9 64 20 15 0 65 1.28
46229--46291 25 2.5 25 97 0 117 44 12 11 31 1.78
50472--50512 20 2.0 20 90 0 64 19 4 7 68 1.32
50988--51079 48 1.9 48 90 0 148 50 10 10 28 1.71
56380--56459 42 1.9 42 100 0 160 30 11 16 42 1.83
56392--56461 23 3.2 23 62 22 60 27 11 17 44 1.82
57458--57526 33 2.1 33 100 0 138 34 23 8 33 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
58479--58536 28 2.1 27 96 3 107 36 10 18 34 1.85
58485--58552 28 2.4 28 90 0 100 39 8 16 35 1.79
63322--63637 166 1.9 166 99 0 623 23 16 13 45 1.83
68796--68832 17 2.2 17 100 0 74 72 10 0 16 1.10
79329--79401 38 1.9 38 100 0 146 21 19 5 53 1.65
88715--88797 21 3.7 23 81 10 84 14 22 8 54 1.67
88715--88783 21 3.1 22 87 6 86 13 20 8 57 1.61
91155--91230 18 4.4 18 85 4 104 31 7 23 36 1.84
93180--93234 27 2.0 27 100 0 110 40 12 21 25 1.89
114278--114321 22 2.0 22 95 4 81 43 15 4 36 1.68
114282--114328 22 2.2 21 84 3 58 46 12 6 34 1.67
117972--118067 50 1.9 50 97 0 183 38 7 12 41 1.71
119683--119767 42 2.0 43 93 2 145 41 11 11 35 1.78
143964--144018 27 2.0 27 100 0 110 25 21 12 40 1.89
145968--146043 18 4.4 18 85 4 104 36 23 7 31 1.84
148409--148483 21 3.4 21 81 5 78 56 9 20 14 1.66
148415--148483 24 3.0 24 83 6 72 57 8 20 13 1.61
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Tables: 1
The End!