NC_058203.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_058203.1 Euphorbia hirta chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 164340 Tables: 1 2 This is table 1 of 2 ( 198 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 201--228 14 2.0 14 100 0 56 57 14 0 28 1.38 4922--4948 13 2.1 13 100 0 54 48 7 0 44 1.31 5033--5070 19 2.0 19 100 0 76 21 15 0 63 1.31 5366--5432 12 5.8 12 75 15 52 34 4 4 56 1.39 5799--5841 20 2.1 20 87 12 61 79 2 9 9 1.03 5799--5841 10 4.3 10 82 8 52 79 2 9 9 1.03 6849--6891 15 2.8 15 80 13 52 55 9 0 34 1.32 6869--6908 20 2.0 20 90 5 62 70 2 0 27 1.01 7904--7973 25 2.8 25 83 14 83 61 0 14 24 1.33 7905--7973 12 5.6 12 78 14 70 62 0 14 23 1.32 8427--8466 11 4.0 11 78 21 52 55 0 0 45 0.99 8430--8533 18 6.2 16 67 16 50 61 0 3 34 1.14 8440--8495 18 3.0 18 81 5 67 58 0 3 37 1.15 8461--8545 13 6.4 14 74 18 67 64 0 5 29 1.17 8469--8548 24 3.2 24 85 11 117 66 0 5 28 1.13 8469--8594 51 2.5 49 82 11 139 64 0 7 28 1.20 8552--8590 20 2.0 20 84 0 51 56 0 12 30 1.37 8479--8594 24 4.6 24 70 15 65 64 0 7 27 1.21 9600--9635 18 2.0 18 94 0 63 55 11 2 30 1.49 9634--9667 17 2.1 16 88 5 50 58 2 5 32 1.37 9806--9839 11 3.2 11 91 8 61 55 0 0 44 0.99 9808--9841 10 3.3 10 95 4 59 58 0 0 41 0.98 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 9832--9879 18 2.9 16 82 11 60 64 4 8 22 1.38 9843--9881 18 2.2 18 100 0 78 69 5 10 15 1.34 9902--9931 15 2.0 15 93 0 51 56 13 0 30 1.37 9927--9954 14 2.0 14 100 0 56 50 0 0 50 1.00 9980--10076 52 1.9 52 95 2 178 39 9 5 46 1.58 10316--10346 15 2.1 15 93 0 53 48 3 0 48 1.17 10611--10658 17 2.9 16 87 9 62 31 4 0 64 1.12 10618--10668 19 2.6 19 82 14 68 33 1 0 64 1.05 10579--10658 17 4.6 17 70 22 60 32 6 1 60 1.30 10665--10702 12 3.2 12 81 11 51 10 7 2 78 1.04 12938--12967 15 1.9 15 93 6 51 66 6 6 20 1.38 13098--13129 16 2.0 16 100 0 64 62 0 18 18 1.33 16152--16191 21 1.9 21 94 0 71 20 7 2 70 1.24 23626--23653 14 2.0 14 100 0 56 57 21 7 14 1.61 27744--27772 12 2.3 13 94 5 51 41 6 3 48 1.47 27905--27964 30 2.0 30 100 0 120 36 6 30 26 1.82 29788--29818 12 2.7 11 90 9 53 41 0 9 48 1.36 31155--31194 19 2.1 19 86 9 55 85 0 2 12 0.71 31401--31427 13 2.1 13 100 0 54 14 0 25 59 1.36 31596--31641 15 3.1 15 84 9 58 45 4 8 41 1.55 31655--31715 22 2.8 22 71 0 59 57 0 1 40 1.08 31703--31730 14 2.0 14 100 0 56 71 0 7 21 1.09 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 31808--31837 11 2.9 10 90 9 51 60 0 10 30 1.30 31830--31897 19 3.3 19 67 25 57 66 0 10 23 1.22 31820--31918 43 2.4 42 94 5 175 67 0 11 21 1.21 32171--32205 17 2.1 17 94 0 61 20 8 17 54 1.68 33049--33092 11 3.9 11 77 16 54 43 2 0 54 1.12 33052--33104 23 2.2 24 93 6 99 41 3 0 54 1.18 33063--33104 13 3.5 13 75 18 54 40 4 0 54 1.21 33503--33542 17 2.4 17 95 0 71 55 5 5 35 1.44 33557--33596 21 1.9 21 100 0 80 40 10 0 50 1.36 33618--33661 23 1.9 23 95 0 79 52 4 0 43 1.22 33618--33659 13 3.5 13 78 18 54 52 4 0 42 1.22 33840--33943 18 5.5 18 74 19 79 42 4 6 46 1.51 33903--33947 22 2.0 22 91 0 72 42 6 6 44 1.57 34009--34041 16 2.1 16 100 0 66 33 6 6 54 1.50 34033--34063 15 2.1 15 100 0 62 38 0 6 54 1.26 34054--34111 20 3.0 20 89 5 91 56 0 13 29 1.38 34058--34111 19 2.8 19 91 2 81 57 0 14 27 1.38 34058--34094 11 3.5 11 78 14 51 59 0 10 29 1.31 34369--34436 22 3.2 21 91 6 111 51 10 4 33 1.56 34374--34436 20 3.0 20 95 4 108 53 9 4 31 1.54 34919--34966 25 1.9 25 86 0 69 64 4 20 10 1.41 38264--38301 2 19.5 2 83 5 51 52 0 5 42 1.24 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 38264--38305 10 4.3 10 96 3 77 52 0 7 40 1.29 38445--38479 17 2.1 16 94 5 61 20 0 8 71 1.11 38447--38479 16 2.1 16 94 0 57 18 0 9 72 1.10 38938--38999 12 5.2 12 86 3 90 35 4 1 58 1.29 38938--39005 23 2.9 23 91 2 100 35 5 2 55 1.39 39171--39207 18 2.1 18 100 0 74 45 5 16 32 1.70 39162--39217 18 2.6 22 73 26 66 51 5 12 30 1.61 39374--39408 13 2.7 13 100 0 70 54 5 8 31 1.54 39480--39533 25 2.1 26 83 10 67 20 9 3 66 1.35 39645--39674 15 2.0 15 100 0 60 26 0 0 73 0.84 39676--39708 17 1.9 17 100 0 66 66 0 3 30 1.06 39709--39736 14 2.0 14 100 0 56 42 7 14 35 1.73 39729--39766 17 2.2 18 85 4 51 57 0 10 31 1.32 39754--39794 15 2.8 15 88 3 66 56 0 7 36 1.27 39903--39936 16 2.1 16 88 0 50 32 0 11 55 1.36 39957--40009 15 3.6 14 76 16 54 35 0 3 60 1.15 46123--46213 3 31.0 3 71 20 68 37 0 0 62 0.95 46115--46204 16 6.1 16 81 17 115 37 0 0 62 0.96 46144--46228 22 3.9 22 86 9 111 35 0 1 63 1.02 46218--46321 26 4.1 26 69 19 76 30 8 0 60 1.27 46241--46321 28 3.0 28 87 5 112 33 9 0 56 1.32 46229--46328 26 4.0 25 79 13 107 32 9 0 59 1.29 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 46311--46352 20 2.1 20 100 0 84 35 4 4 54 1.42 46339--46382 18 2.4 18 96 0 79 56 0 9 34 1.31 46416--46472 16 3.3 17 79 13 62 40 0 1 57 1.09 46415--46475 19 3.4 18 80 12 72 40 0 1 57 1.08 46469--46515 16 3.0 16 78 3 51 27 6 4 61 1.39 46496--46548 20 2.7 18 83 13 61 30 3 0 66 1.10 46537--46561 13 1.9 13 100 0 50 36 0 0 64 0.94 46493--46565 15 4.5 15 77 14 56 31 2 0 65 1.06 46571--46620 24 2.1 23 88 3 73 44 4 4 48 1.40 46605--46635 14 2.2 14 100 0 62 64 0 6 29 1.18 46687--46712 13 2.0 13 100 0 52 61 0 7 30 1.24 50894--50929 18 2.0 18 100 0 72 44 11 16 27 1.82 51408--51434 14 1.9 14 100 0 54 51 0 18 29 1.46 51463--51508 22 2.1 21 92 4 74 8 10 0 80 0.91 51464--51525 21 3.0 22 70 21 55 12 12 0 74 1.08 54934--54961 13 2.2 13 100 0 56 32 7 0 60 1.24 55001--55053 23 2.3 23 87 6 72 37 3 7 50 1.49 55047--55081 16 2.2 16 94 0 61 45 2 0 51 1.16 55149--55191 16 2.7 16 92 7 70 46 4 0 48 1.22 55280--55311 16 2.0 16 100 0 64 25 18 18 37 1.94 56837--56876 19 2.1 19 100 0 80 37 20 5 37 1.74 62017--62303 18 15.9 18 93 0 466 39 25 19 16 1.91 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 62877--62926 25 2.0 25 96 0 91 24 22 8 46 1.78 62938--62973 16 2.2 16 100 0 72 38 11 0 50 1.38 62953--63060 54 2.0 54 100 0 216 38 3 5 51 1.43 62966--63054 26 3.2 29 68 12 96 41 2 6 49 1.41 63728--63769 21 2.0 21 95 0 75 45 7 9 38 1.64 63752--63800 15 3.1 15 77 11 53 55 2 6 36 1.37 64034--64067 13 2.7 12 86 13 50 55 8 2 32 1.45 64184--64222 15 2.5 16 95 4 71 53 2 5 38 1.37 64150--64221 24 3.0 24 78 13 85 52 1 8 37 1.40 64343--64376 16 2.1 16 100 0 68 55 5 0 38 1.24 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2