NC_058216.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_058216.1 Sauropus spatulifolius chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154707
Tables: 1
This is table 1 of 1 ( 75 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
103--140 18 2.1 18 100 0 76 39 10 10 39 1.74
283--319 19 1.9 19 100 0 74 70 0 2 27 1.01
275--320 21 2.2 21 92 7 76 71 0 4 23 1.03
285--317 17 1.9 18 88 11 52 69 0 3 27 1.03
4538--4577 19 2.1 19 100 0 80 45 5 0 50 1.23
9187--9232 12 3.7 13 74 11 51 26 10 4 58 1.50
9356--9388 12 2.8 12 90 9 50 45 18 0 36 1.49
9371--9407 16 2.3 16 95 0 65 54 8 0 37 1.30
9560--9611 26 2.0 26 100 0 104 26 15 15 42 1.87
10620--10657 19 2.0 19 89 0 58 44 5 7 42 1.56
11046--11089 18 2.4 18 96 0 79 31 9 0 59 1.29
11103--11135 16 2.1 16 100 0 66 30 0 24 45 1.53
13543--13577 18 1.9 18 94 0 61 25 17 0 57 1.40
31897--31941 21 2.1 21 100 0 90 66 0 13 20 1.24
33105--33146 21 2.0 21 95 0 75 14 40 0 45 1.45
33269--33315 21 2.2 21 96 0 85 34 12 10 42 1.78
33278--33325 21 2.4 21 86 6 64 39 8 8 43 1.65
33433--33477 20 2.4 18 80 16 56 26 13 0 60 1.34
33441--33480 20 2.1 19 95 4 71 32 10 0 57 1.32
33686--33720 17 2.1 17 100 0 70 71 0 5 22 1.07
33727--33777 24 2.1 24 100 0 102 37 3 13 45 1.63
37846--37884 19 2.1 19 100 0 78 48 0 5 46 1.24
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
37927--38004 41 1.9 40 84 7 104 56 10 6 26 1.57
38165--38206 21 2.0 21 100 0 84 47 14 14 23 1.80
38696--38733 19 2.0 19 94 0 67 57 10 18 13 1.63
43949--43993 17 2.7 16 90 10 72 26 6 0 66 1.16
49970--50009 19 2.1 19 95 0 71 22 10 17 50 1.76
52021--52047 14 1.9 14 100 0 54 22 14 3 59 1.51
52244--52283 19 2.1 19 95 0 71 35 25 2 37 1.69
53998--54037 17 2.4 17 95 0 71 35 15 15 35 1.88
58246--58281 18 2.0 18 100 0 72 27 16 5 50 1.68
58772--58814 21 2.0 21 100 0 86 18 32 0 48 1.48
60782--60825 22 2.0 22 100 0 88 31 13 13 40 1.84
60894--60939 20 2.3 20 96 3 85 50 8 0 41 1.33
65199--65235 16 2.3 16 90 0 56 45 10 10 32 1.74
65315--65365 26 2.0 25 88 3 75 31 7 17 43 1.78
67972--67996 12 2.1 12 100 0 50 40 8 0 52 1.31
67989--68030 21 2.0 21 95 0 75 61 0 11 26 1.30
68211--68306 21 4.4 22 94 4 151 45 4 0 50 1.21
69197--69243 20 2.3 20 100 0 94 48 0 8 42 1.33
69237--69266 15 1.9 16 93 6 53 40 6 0 53 1.27
71301--71358 11 5.1 11 78 15 64 63 0 0 36 0.94
71299--71358 23 2.6 23 91 0 93 61 0 0 38 0.96
71309--71352 12 3.8 12 75 6 54 65 0 0 34 0.93
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
73537--73564 12 2.3 12 100 0 56 53 0 14 32 1.41
73556--73612 21 2.9 18 83 16 78 49 5 1 43 1.35
73564--73605 21 2.0 21 100 0 84 52 4 0 42 1.22
73607--73653 23 2.0 23 95 0 85 36 8 2 53 1.44
73646--73686 20 2.0 20 100 0 82 41 4 14 39 1.67
73849--73907 19 3.1 19 95 4 109 49 5 10 35 1.59
78409--78467 19 3.1 19 95 4 109 38 10 0 50 1.36
78409--78469 20 3.1 20 97 2 115 39 9 0 50 1.35
81088--81136 24 2.0 24 84 0 62 28 20 16 34 1.94
83801--83856 28 2.0 28 100 0 112 35 25 10 28 1.89
85695--85724 15 2.0 15 100 0 60 33 6 0 60 1.23
90802--90869 21 3.2 21 82 0 82 11 22 7 58 1.57
92063--92145 39 2.1 39 97 0 157 36 10 25 27 1.89
93258--93314 18 3.2 17 87 5 78 28 7 29 35 1.83
96120--96157 16 2.4 16 95 0 67 21 10 23 44 1.83
101415--101459 20 2.2 20 96 0 81 33 8 15 42 1.78
102316--102346 15 2.1 15 100 0 62 48 0 32 19 1.49
111384--111414 16 2.0 15 93 6 53 70 0 6 22 1.09
111435--111465 13 2.3 14 94 5 55 74 6 0 19 1.03
113727--113768 15 2.8 15 78 7 50 76 0 9 14 1.02
114975--115005 15 2.1 15 100 0 62 6 19 6 67 1.35
115164--115196 8 4.2 8 84 7 50 54 9 0 36 1.32
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
115170--115200 15 2.1 15 100 0 62 61 6 0 32 1.21
115228--115277 25 2.0 25 100 0 100 40 4 8 48 1.51
122229--122261 16 2.1 16 100 0 66 63 0 12 24 1.28
139800--139830 15 2.1 15 100 0 62 19 32 0 48 1.49
140687--140731 20 2.2 20 96 0 81 42 15 8 33 1.78
145989--146026 16 2.4 16 95 0 67 44 23 10 21 1.83
148832--148888 18 3.2 18 87 5 80 35 29 7 28 1.83
150001--150083 39 2.1 39 97 0 157 27 25 10 36 1.89
151278--151366 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!