NC_058534.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_058534.1 Smilax glabra chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157889
Tables: 1
This is table 1 of 1 ( 113 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
158--200 21 2.0 21 100 0 86 44 18 9 27 1.80
3241--3268 14 2.0 14 100 0 56 42 7 14 35 1.73
3246--3308 18 3.6 18 85 8 69 42 1 7 47 1.42
3406--3434 14 2.1 14 100 0 58 58 6 0 34 1.25
4554--4597 20 2.2 20 83 4 52 22 4 2 70 1.17
4593--4638 9 5.4 9 80 15 53 50 0 4 45 1.21
4593--4638 16 2.8 17 93 3 76 50 0 4 45 1.21
5871--5932 2 34.0 2 81 18 82 50 0 0 50 1.00
5868--5932 9 7.0 9 85 11 87 49 0 0 50 1.00
5871--5932 20 3.2 20 95 4 110 50 0 0 50 1.00
6321--6345 13 1.9 13 100 0 50 40 12 8 40 1.72
6573--6616 11 3.8 11 82 11 61 52 2 11 34 1.50
6567--6618 24 2.2 24 100 0 104 50 3 11 34 1.57
6567--6618 11 4.3 12 76 16 54 50 3 11 34 1.57
8350--8418 34 2.0 34 100 0 138 20 28 18 31 1.96
8742--8836 30 3.3 30 73 11 117 35 0 5 58 1.20
8733--8844 56 2.0 56 100 0 224 37 0 7 55 1.27
9798--9847 16 2.8 18 88 11 68 42 4 0 54 1.19
13144--13187 22 2.0 22 100 0 88 45 18 22 13 1.84
13594--13623 15 2.0 15 93 0 51 50 3 6 40 1.45
14396--14449 25 2.2 25 100 0 108 33 11 3 51 1.55
15456--15541 12 8.0 11 69 23 58 48 2 0 48 1.14
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
15465--15539 7 11.6 7 75 24 67 49 2 0 48 1.15
15436--15533 32 3.2 32 90 8 143 48 4 0 46 1.20
15594--15632 19 2.1 19 95 0 69 48 15 2 33 1.58
16591--16646 4 14.5 4 77 7 53 33 0 0 66 0.92
16604--16653 15 3.3 15 86 5 66 36 0 0 64 0.94
16578--16656 19 4.2 19 88 1 106 34 2 0 63 1.08
16709--16750 21 2.0 21 100 0 84 38 14 4 42 1.66
27672--27753 27 3.0 27 98 0 155 35 10 20 32 1.88
29840--29884 16 2.7 16 93 6 72 48 17 22 11 1.78
34514--34553 16 2.6 16 96 4 73 22 12 0 65 1.26
43758--43784 13 2.1 13 100 0 54 14 22 0 62 1.31
45814--45883 34 2.1 34 100 0 140 40 2 0 57 1.14
45814--45904 34 2.7 34 89 6 114 42 4 0 52 1.21
45933--45962 15 2.0 15 100 0 60 33 13 0 53 1.40
45955--45987 16 2.1 16 100 0 66 57 6 6 30 1.47
46877--46906 14 2.1 14 100 0 60 36 0 0 63 0.95
47886--47915 14 2.2 13 94 5 51 60 10 0 30 1.30
50331--50385 11 4.7 12 75 11 51 32 1 9 56 1.41
50332--50408 34 2.4 29 75 19 73 33 1 9 55 1.39
50345--50400 18 3.2 18 78 17 64 33 0 10 55 1.35
50469--50511 17 2.5 18 88 7 63 67 0 2 30 1.03
50483--50532 13 3.8 13 83 2 64 62 0 2 36 1.07
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
50468--50520 17 3.4 17 73 26 62 62 0 3 33 1.13
50628--50741 17 7.3 16 80 17 64 55 0 3 41 1.17
50675--50774 8 13.4 7 74 20 71 57 0 4 39 1.18
50680--50751 10 7.3 10 76 14 60 59 0 0 40 0.97
50672--50744 31 2.4 31 100 0 146 58 0 0 41 0.98
57067--57091 12 2.1 12 100 0 50 16 24 0 60 1.36
57645--57715 34 2.1 34 100 0 142 40 14 8 36 1.76
59749--59833 18 4.4 20 66 31 69 41 0 0 58 0.98
59768--59853 18 4.7 18 69 21 70 46 0 0 53 1.00
59772--59857 11 7.6 12 76 18 69 46 0 0 53 1.00
59738--59880 56 2.6 56 94 4 245 42 0 0 57 0.98
59761--59865 45 2.4 42 80 12 113 43 0 0 56 0.99
59919--59990 14 4.7 14 79 14 63 48 2 0 48 1.16
59917--59987 23 3.0 23 72 12 72 46 2 0 50 1.16
59919--60001 14 6.1 14 71 20 54 48 2 0 49 1.14
60253--60290 15 2.5 15 95 0 67 42 7 10 39 1.69
61520--61551 16 2.0 16 93 0 55 25 15 12 46 1.81
64501--64526 13 2.0 13 100 0 52 38 0 7 53 1.30
67313--67339 13 2.1 13 100 0 54 37 0 22 40 1.54
67619--67647 14 2.1 14 100 0 58 34 13 0 51 1.42
68358--68389 15 2.0 17 88 11 50 50 0 0 50 1.00
68923--69012 16 5.9 16 72 26 72 56 2 0 41 1.11
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
68914--69039 61 2.1 61 100 0 252 57 3 0 39 1.15
68906--69052 27 5.1 27 73 20 106 57 3 0 39 1.16
68910--69052 13 11.2 12 70 21 71 57 3 0 39 1.16
71342--71380 17 2.3 17 100 0 78 87 0 5 7 0.68
71344--71382 19 1.9 19 85 10 51 87 0 5 7 0.68
71837--71883 24 1.9 25 86 4 69 31 10 2 55 1.46
76415--76507 43 2.1 43 98 2 177 61 6 19 12 1.53
78915--78948 16 2.1 16 100 0 68 47 0 5 47 1.26
82715--82740 13 2.0 13 100 0 52 30 0 15 53 1.42
84851--84882 11 2.8 12 86 13 50 21 0 0 78 0.76
84876--84900 13 1.9 13 100 0 50 44 0 0 56 0.99
84883--84934 19 3.0 18 84 13 65 53 0 0 46 1.00
84893--84955 17 3.9 17 75 22 57 57 0 0 42 0.99
90180--90262 21 3.8 21 88 4 112 14 26 10 48 1.77
90201--90269 21 3.3 21 91 0 111 13 30 8 47 1.72
92607--92663 24 2.4 24 100 0 114 33 8 24 33 1.86
95720--95752 16 2.1 16 94 0 57 60 6 9 24 1.49
100402--100467 11 6.2 10 74 11 51 10 4 3 81 0.94
112039--112068 15 2.0 15 100 0 60 33 6 20 40 1.78
114418--114518 33 3.2 33 60 21 79 37 14 9 37 1.80
114412--114535 62 2.0 62 100 0 248 38 12 11 37 1.80
114727--114772 23 2.0 23 100 0 92 56 13 4 26 1.55
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
115076--115119 16 2.8 16 82 6 54 43 0 0 56 0.99
115044--115210 82 2.0 82 100 0 334 37 5 8 47 1.58
115158--115201 16 2.8 16 82 6 54 43 0 0 56 0.99
115156--115216 27 2.3 26 81 13 70 42 0 1 55 1.09
115074--115223 25 5.6 26 67 21 78 40 4 5 50 1.44
115959--115984 13 2.0 13 100 0 52 30 7 15 46 1.74
119751--119789 17 2.2 18 95 4 71 53 7 0 38 1.30
119756--119808 6 8.5 6 78 21 56 50 3 1 43 1.30
119780--119806 14 1.9 14 100 0 54 51 0 3 44 1.19
119814--120089 137 2.0 137 99 0 543 47 7 6 39 1.56
120157--120309 76 2.0 76 100 0 306 36 23 19 20 1.95
121502--121549 13 3.5 13 74 20 53 25 4 10 60 1.47
121498--121554 28 2.0 28 100 0 114 24 7 12 56 1.61
122256--122282 14 1.9 14 100 0 54 40 0 14 44 1.46
127287--127354 32 2.1 32 100 0 136 42 8 14 33 1.77
146858--146890 16 2.1 16 94 0 57 24 9 6 60 1.49
149947--150003 24 2.4 24 100 0 114 33 24 8 33 1.86
152341--152409 21 3.3 21 91 0 111 47 8 30 13 1.72
152348--152430 21 3.8 21 88 4 112 48 10 26 14 1.77
157608--157725 25 4.9 23 78 19 100 46 0 0 53 1.00
157629--157699 2 38.0 2 81 13 89 46 0 0 53 1.00
157613--157712 23 4.4 23 83 13 111 45 0 0 55 0.99
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
157690--157728 13 2.9 13 92 3 60 51 0 0 48 1.00
157722--157753 11 2.8 12 86 13 50 78 0 0 21 0.76
157743--157790 23 2.1 23 100 0 96 52 0 4 43 1.20
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Tables: 1
The End!