NC_058627.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_058627.1 Rheum officinale strain Baill chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 161563
Tables: 1
This is table 1 of 1 ( 50 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1640--1664 12 2.1 12 100 0 50 52 16 8 24 1.70
9413--9439 11 2.5 11 100 0 54 55 0 0 44 0.99
11106--11140 11 3.1 11 88 8 52 71 0 0 28 0.86
11105--11142 12 3.2 12 88 7 60 71 0 0 28 0.87
27773--27801 10 2.9 10 100 0 58 31 20 10 37 1.86
34403--34444 16 2.8 15 82 7 50 40 11 11 35 1.79
34415--34445 16 1.9 16 93 0 53 38 12 9 38 1.77
47116--47141 13 2.0 13 100 0 52 38 7 0 53 1.30
48881--48917 16 2.3 16 95 0 65 35 2 5 56 1.36
48963--49005 18 2.3 19 96 4 79 67 0 4 27 1.10
48977--49031 25 2.2 25 81 12 60 69 0 7 23 1.14
49626--49712 13 6.1 14 76 20 76 54 4 2 39 1.34
49626--49718 45 2.1 45 88 7 138 53 4 2 39 1.32
49655--49704 26 1.9 26 95 0 91 54 6 2 38 1.37
51610--51644 16 2.2 16 89 0 52 31 0 5 62 1.18
53307--53342 18 2.0 18 88 0 54 44 8 5 41 1.58
66619--66647 13 2.2 13 100 0 58 58 6 6 27 1.50
67392--67429 12 2.9 14 84 15 62 57 0 7 34 1.28
68226--68273 8 5.9 8 79 13 53 29 2 16 52 1.56
68224--68278 24 2.3 24 93 0 92 30 1 16 50 1.55
68307--68336 15 2.0 15 93 0 51 40 10 10 40 1.72
69366--69407 22 1.9 22 90 0 66 23 9 0 66 1.21
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
69372--69414 22 2.0 22 90 0 68 20 11 0 67 1.22
69986--70063 38 2.0 41 82 14 101 61 2 7 28 1.37
71335--71359 13 1.9 13 100 0 50 72 0 12 16 1.13
73591--73628 17 2.4 16 87 12 60 55 0 5 39 1.23
84190--84227 18 2.1 18 100 0 76 63 0 10 26 1.27
92268--92310 21 2.0 21 90 0 68 34 16 20 27 1.94
96118--96221 52 2.0 52 100 0 208 32 28 19 19 1.96
96510--96545 17 2.1 17 100 0 72 30 22 5 41 1.76
109696--109761 32 2.1 32 91 0 105 42 22 7 27 1.80
111370--111427 26 2.3 24 80 16 64 63 0 6 29 1.20
111386--111427 20 2.1 20 86 8 59 66 0 7 26 1.17
111448--111504 26 2.2 26 84 12 73 50 5 10 33 1.59
112244--112307 21 3.0 21 82 8 76 28 12 26 32 1.93
113313--113346 12 2.8 12 95 0 59 41 11 26 20 1.87
120703--121664 484 2.0 484 99 0 1915 35 15 14 35 1.88
125485--125565 40 2.0 40 100 0 162 46 9 16 27 1.78
134731--134764 12 2.8 12 95 0 59 20 26 11 41 1.87
134720--134772 12 4.4 12 82 0 52 22 28 7 41 1.81
135770--135825 21 2.7 21 88 0 76 35 26 10 26 1.89
135779--135833 21 2.6 20 86 11 74 32 27 12 27 1.93
136572--136629 26 2.2 26 82 11 75 34 10 5 50 1.59
136650--136691 20 2.1 20 86 8 59 26 7 0 66 1.17
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
136659--136694 17 2.1 17 89 0 54 27 5 0 66 1.13
136650--136707 26 2.3 24 80 16 64 29 6 0 63 1.20
138316--138381 32 2.1 32 91 0 105 27 7 22 42 1.80
151532--151567 17 2.1 17 100 0 72 41 5 22 30 1.76
151758--151847 45 2.0 45 100 0 180 26 22 24 26 2.00
155760--155802 21 2.0 21 90 0 68 27 20 16 34 1.94
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Tables: 1
The End!