NC_058756.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_058756.1 Pinellia pedatisecta chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 164682 Tables: 1 2 This is table 1 of 2 ( 203 repeats found ) Click on indices to view alignment Table Explanation ----------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 7--141 5 28.8 5 68 24 82 40 0 0 60 0.97 16--176 47 3.4 46 77 16 168 36 0 0 63 0.95 16--148 32 4.3 31 75 18 111 39 0 0 60 0.97 8--119 27 4.1 27 79 12 104 41 0 0 58 0.98 8--168 82 2.0 82 82 7 202 37 0 0 62 0.96 128--189 21 3.0 22 81 6 76 30 0 0 69 0.89 4436--4497 25 2.6 25 94 5 110 59 6 3 30 1.38 5541--5568 14 2.0 14 100 0 56 50 7 7 35 1.57 5707--5744 19 2.0 19 100 0 76 47 10 5 36 1.61 7365--7408 23 1.9 23 100 0 88 54 0 11 34 1.36 7376--7426 16 3.1 16 75 10 50 52 0 17 29 1.45 7400--7432 11 3.1 11 91 4 50 48 0 24 27 1.51 9547--9590 21 2.0 22 95 4 81 52 2 0 45 1.13 9667--9715 22 2.3 22 96 3 91 44 8 4 42 1.53 9907--9946 18 2.2 18 95 0 71 32 7 0 60 1.25 9904--9951 18 2.5 20 76 16 55 31 6 0 62 1.20 9957--10365 25 16.2 26 75 17 94 42 0 1 55 1.09 9957--10006 13 3.9 13 89 5 75 38 0 0 62 0.96 9970--10377 19 21.8 18 67 24 74 42 0 1 55 1.10 9964--10377 30 13.3 30 71 21 95 42 0 1 55 1.10 9996--10152 2 92.5 2 63 30 64 51 0 0 47 1.05 9965--10105 13 11.7 13 77 16 85 52 0 0 47 1.00 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 9990--10102 5 23.2 5 69 23 73 55 0 0 44 0.99 9997--10168 29 5.7 30 72 18 110 50 0 0 48 1.05 9965--10383 41 10.3 41 69 24 143 42 0 1 55 1.09 10101--10384 19 13.1 23 68 24 117 38 0 2 59 1.11 10082--10384 11 27.8 11 74 20 221 38 0 2 59 1.10 10398--10454 14 3.9 15 78 21 59 66 0 1 31 1.02 10402--10431 14 2.1 14 100 0 60 70 0 0 30 0.88 15213--15277 25 2.6 25 85 9 80 27 0 4 67 1.10 15212--15258 14 3.7 12 81 18 51 31 0 2 65 1.04 15236--15283 20 2.4 19 80 16 53 27 2 4 66 1.21 17548--17578 16 1.9 16 93 0 53 9 6 0 83 0.79 29882--29950 10 6.8 10 84 12 88 42 0 0 57 0.98 29882--29952 21 3.5 21 92 5 119 42 0 0 57 0.98 29968--30065 6 16.7 6 74 10 60 42 1 2 54 1.19 29969--30066 20 4.8 20 73 12 74 41 1 3 54 1.23 29969--30101 26 4.9 27 78 17 123 39 1 3 55 1.27 30094--30129 18 2.0 18 100 0 72 38 5 5 50 1.49 30125--30193 22 3.3 22 76 9 74 36 4 2 56 1.34 32416--32446 10 3.0 10 90 9 53 41 0 0 58 0.98 32416--32447 11 3.0 11 95 4 57 43 0 0 56 0.99 32620--32644 10 2.5 10 100 0 50 72 0 0 28 0.86 34324--34365 20 2.2 20 87 8 61 42 11 0 45 1.41 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 34356--34447 17 6.1 14 82 15 89 56 0 0 43 0.99 34360--34445 2 48.0 2 72 21 66 54 0 0 45 0.99 34353--34444 14 6.1 14 81 15 80 54 0 0 45 0.99 34368--34447 31 2.5 32 86 11 112 57 0 0 42 0.98 34360--34447 33 2.8 31 79 19 110 55 0 0 44 0.99 38825--38855 14 2.2 14 94 0 53 22 16 12 48 1.80 39365--39394 12 2.6 11 90 10 51 30 6 0 63 1.20 39364--39407 14 3.2 14 81 12 56 27 6 0 65 1.17 39364--39417 25 2.1 27 83 13 69 27 7 0 64 1.20 46488--46521 15 2.3 15 90 5 52 14 8 5 70 1.31 49787--49811 11 2.3 11 100 0 50 36 8 0 56 1.29 49781--49829 18 2.8 18 72 25 50 34 6 0 59 1.22 49832--50056 6 36.2 6 69 21 119 63 0 0 36 0.98 49831--50041 20 11.1 20 76 14 173 63 0 0 36 0.95 49852--50054 33 5.8 34 77 16 195 63 0 0 36 0.99 49831--50053 15 15.4 14 73 15 100 62 0 0 37 0.99 49831--50056 9 23.8 10 71 19 137 62 0 0 36 0.99 49834--50056 37 6.1 36 74 17 178 63 0 0 36 0.98 50071--50122 27 2.0 25 92 7 86 51 0 9 38 1.35 50137--50235 14 7.4 13 73 13 60 45 1 2 51 1.19 50178--50222 10 4.8 9 84 15 56 46 0 0 53 1.00 50174--50221 18 2.8 18 80 20 59 45 0 0 54 0.99 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 50137--50236 38 2.7 36 81 7 110 46 1 2 51 1.19 50198--50245 14 3.4 14 88 0 60 50 0 6 43 1.27 50950--51029 29 2.7 29 81 14 85 37 3 0 58 1.16 51007--51046 10 4.4 10 76 23 52 52 0 0 47 1.00 51005--51050 16 2.9 16 93 3 76 54 0 0 45 0.99 51012--51054 21 2.0 21 86 0 59 60 0 0 39 0.97 51090--51268 49 3.7 49 86 10 230 29 3 0 66 1.09 51062--51239 4 44.0 4 72 16 136 28 2 0 69 1.00 51151--51252 12 8.4 12 76 20 61 29 4 0 65 1.13 53270--53304 18 1.9 18 88 11 54 45 2 0 51 1.16 53306--53352 20 2.3 20 88 0 67 61 2 4 31 1.27 60534--60574 20 2.0 20 100 0 82 39 0 14 46 1.45 64872--64909 15 2.6 15 95 4 69 36 15 0 47 1.46 71541--71602 20 3.0 20 88 4 88 64 0 4 30 1.14 71590--71715 16 9.1 15 67 24 73 59 0 0 39 1.03 71558--71813 9 29.1 9 65 19 96 61 0 1 36 1.05 71590--71715 41 3.0 41 84 10 157 59 0 0 39 1.03 71608--71655 16 2.9 17 93 6 89 60 0 0 39 0.97 71610--71837 18 13.3 17 68 21 88 61 0 1 37 1.04 71573--71715 67 2.2 66 80 13 179 60 0 1 38 1.06 71633--71726 24 3.8 26 82 8 72 61 0 1 37 1.03 71548--71715 67 2.5 66 81 11 175 61 0 1 36 1.07 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 71605--71756 67 2.3 67 80 8 159 62 0 1 36 1.04 71656--71838 83 2.2 84 82 12 211 61 0 1 37 1.06 71743--71850 35 3.4 32 83 14 127 59 0 0 39 1.04 71800--71853 27 2.0 27 81 0 63 61 0 3 35 1.14 71920--71965 22 2.1 22 100 0 92 36 19 17 26 1.94 74163--74208 21 2.2 20 84 3 56 58 4 2 34 1.30 74282--74321 21 1.9 21 89 0 62 37 27 7 27 1.84 74751--74780 14 2.1 14 93 0 51 20 3 0 76 0.92 84323--84436 15 8.1 15 75 22 79 38 0 0 61 0.96 84310--84401 7 15.0 6 71 24 68 35 0 0 64 0.94 84320--84397 23 3.2 23 78 18 77 34 0 0 65 0.93 84310--84492 17 10.9 17 72 20 93 40 0 0 59 0.97 84310--84486 6 27.6 7 66 27 76 40 0 0 59 0.97 84338--84437 15 6.9 15 73 24 81 40 0 0 60 0.97 84408--84517 53 2.0 55 81 13 131 47 0 0 52 1.00 88444--88475 16 2.0 16 93 0 55 34 28 6 31 1.82 90587--90620 15 2.4 14 90 5 50 5 0 5 88 0.64 95675--95760 24 3.7 24 81 9 115 15 24 12 47 1.80 95695--95766 21 3.3 21 80 12 83 13 25 11 50 1.75 95675--95766 45 2.1 45 95 2 168 14 23 11 50 1.76 98135--98208 15 4.7 15 72 21 71 33 5 22 37 1.77 98142--98223 24 3.4 24 93 0 137 35 6 23 35 1.80 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 101369--101485 5 25.2 5 71 26 73 63 0 0 36 0.95 101367--101531 2 89.5 2 67 19 65 58 1 1 38 1.16 101358--101473 39 2.9 40 80 15 134 63 0 0 36 0.94 101371--101493 30 4.2 29 72 17 103 62 0 0 36 1.01 101357--101486 35 3.8 35 76 17 139 63 0 0 36 0.94 101367--101488 67 1.9 63 85 10 165 63 0 0 36 0.95 101496--101531 15 2.4 15 95 0 63 50 2 5 41 1.40 116342--116388 12 3.8 12 88 2 67 51 2 0 46 1.13 116506--116784 16 17.6 16 70 19 97 46 1 1 50 1.19 116514--116796 36 8.0 36 69 22 131 45 1 1 51 1.18 ----------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2