NC_058881.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_058881.1 Camellia meiocarpa clone 3 chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  156550

    Tables:   1   

    This is table  1  of  1  ( 21 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  11176--11227                       23       2.3      23          86        6         70      75   0    1    23   0.91

  18561--18634                       18       4.1      18          96        0         130     32   27   10   29   1.90

  18568--18649                       18       4.8      17          92        4         78      32   26   10   29   1.91

  21003--21092                       21       4.1      22          75        8         76      54   10   23   12   1.67

  30327--30373                       25       2.0      25          83        8         62      68   6    4    21   1.30

  32242--32275                       16       2.1      16          94        0         59      38   0    8    52   1.33

  32301--32351                       22       2.3      23          80        10        61      68   5    3    21   1.27

  72407--72443                       19       1.9      19          100       0         74      43   5    10   40   1.63

  74271--74301                       16       1.9      16          100       0         62      58   6    3    32   1.40

  78733--78763                       16       1.9      16          93        0         53      25   6    6    61   1.45

  86290--86329                       16       2.5      16          87        0         53      35   10   5    50   1.58

  116959--117013                     24       2.5      22          85        8         67      14   23   12   49   1.78

  116981--117048                     21       3.2      21          77        8         75      11   22   8    57   1.61

  119402--119487                     18       4.9      17          92        4         77      30   11   26   31   1.92

  119417--119490                     18       4.1      18          96        0         130     29   10   27   32   1.90

  126824--126875                     23       2.2      24          86        6         72      23   1    0    75   0.91

  127361--127397                     18       2.1      18          89        0         56      18   13   8    59   1.58

  139824--139865                     20       2.0      21          86        13        61      54   21   0    23   1.44

  149036--149061                     12       2.2      12          100       0         52      34   15   15   34   1.89

  155104--155159                     15       3.9      14          75        15        51      1    23   3    71   1.11

  156407--156440                     16       2.1      17          88        5         52      26   11   2    58   1.47
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!