NC_058896.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_058896.1 Crataegus cuneata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159730
Tables: 1
This is table 1 of 1 ( 78 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8--38 7 4.6 7 92 8 55 74 0 0 25 0.82
11--36 13 2.0 13 100 0 52 76 0 0 23 0.78
1623--1655 16 2.1 16 100 0 66 33 6 6 54 1.50
5083--5111 15 1.9 15 100 0 58 55 6 0 37 1.27
6579--6621 20 2.2 20 100 0 86 55 9 4 30 1.52
7163--7195 16 2.1 16 94 0 57 51 3 6 39 1.42
8697--8727 15 2.1 15 93 0 53 51 9 12 25 1.70
9900--9926 11 2.5 11 100 0 54 81 0 7 11 0.87
10308--10376 24 2.6 25 77 15 68 43 1 8 46 1.43
10386--10438 23 2.3 24 90 6 83 49 3 0 47 1.19
10525--10574 22 2.2 23 92 7 93 46 8 12 34 1.70
10575--10613 19 2.1 19 95 0 69 51 2 5 41 1.38
13736--13769 17 2.0 17 100 0 68 41 11 17 29 1.85
21705--21734 15 2.0 15 93 0 51 36 13 16 33 1.88
21710--21739 15 2.0 15 93 0 51 33 13 23 30 1.93
28256--28282 13 2.1 13 100 0 54 40 0 22 37 1.54
30913--30952 20 2.0 20 95 0 71 45 7 0 47 1.31
30957--30985 14 2.1 14 100 0 58 44 13 13 27 1.82
33485--33513 14 2.1 14 100 0 58 20 31 6 41 1.79
33629--33677 24 2.0 24 100 0 98 51 16 0 32 1.45
33707--33742 9 3.8 10 92 7 58 50 0 0 50 1.00
33707--33744 19 2.1 18 90 5 58 47 0 0 52 1.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
34152--34235 17 4.7 18 73 15 66 55 0 0 44 0.99
34189--34227 9 4.3 9 90 0 60 56 0 0 43 0.99
34163--34227 18 3.4 18 81 12 67 55 0 0 44 0.99
34620--34670 18 2.8 18 90 3 75 29 5 3 60 1.38
35138--35177 20 2.0 20 100 0 80 55 0 35 10 1.34
38832--38858 12 2.2 12 100 0 54 62 7 0 29 1.22
38949--38988 15 2.7 15 96 0 71 60 5 0 35 1.19
38943--38970 12 2.3 12 100 0 56 60 7 0 32 1.24
38942--38985 12 3.4 12 77 17 52 56 6 0 36 1.26
39031--39071 20 2.0 20 100 0 82 48 0 0 51 1.00
48896--48949 20 2.8 20 91 8 87 44 0 7 48 1.31
49326--49394 34 2.0 34 100 0 138 57 2 11 27 1.48
49334--49389 17 3.3 17 72 18 62 60 1 10 26 1.40
49343--49402 16 3.6 17 71 20 56 63 3 10 23 1.40
54275--54339 26 2.7 23 77 13 69 43 4 4 47 1.44
54277--54333 26 2.2 25 87 3 78 43 3 3 49 1.36
54327--54364 18 2.1 18 90 0 58 50 0 10 39 1.37
54386--54445 30 2.0 30 100 0 120 40 6 0 53 1.27
54427--54468 2 21.0 2 80 9 50 52 4 0 42 1.22
54398--54468 30 2.4 30 82 0 79 47 5 0 46 1.26
57938--57967 14 2.1 14 93 0 51 20 13 10 56 1.65
59785--59809 12 2.1 12 100 0 50 60 0 8 32 1.26
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
62346--62388 10 4.0 10 77 16 50 51 6 20 20 1.71
62350--62395 23 2.0 23 100 0 92 52 4 21 21 1.64
62402--62493 24 4.2 22 81 15 102 35 0 1 63 1.02
62405--62493 43 2.1 41 89 4 133 35 0 1 62 1.02
62427--62473 19 2.5 19 100 0 94 38 0 0 61 0.96
66762--66792 16 1.9 16 100 0 62 41 0 6 51 1.27
68858--68893 18 2.1 17 94 5 63 38 5 8 47 1.57
69777--69820 22 2.0 22 100 0 88 54 9 4 31 1.52
70601--70637 19 2.0 18 94 5 65 0 10 2 86 0.67
71419--71457 21 1.9 21 89 5 62 33 20 10 35 1.86
73334--73360 13 2.1 13 100 0 54 66 0 14 18 1.25
77917--77952 18 2.0 18 94 0 63 41 5 11 41 1.64
84132--84178 24 2.0 24 95 0 85 27 0 4 68 1.08
85941--85985 22 2.0 22 95 0 81 35 22 6 35 1.80
88513--88552 20 2.0 20 95 0 71 37 10 2 50 1.50
92717--92784 21 3.2 21 82 0 82 11 22 7 58 1.57
95139--95190 18 2.9 18 94 0 95 32 7 28 30 1.85
98143--98204 21 3.0 21 97 2 117 53 4 0 41 1.22
102651--102689 15 2.9 14 88 11 55 17 10 0 71 1.12
102693--102718 12 2.2 12 100 0 52 7 7 0 84 0.77
111431--111494 31 2.1 31 93 0 110 37 26 9 26 1.87
114840--114870 12 2.7 12 95 5 55 25 16 0 58 1.38
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
117684--117724 20 2.0 20 100 0 82 56 0 14 29 1.39
120328--120378 10 5.7 10 74 25 60 66 0 11 21 1.23
120327--120377 17 3.0 17 100 0 102 64 0 11 23 1.26
125414--125438 12 2.1 12 100 0 50 48 8 0 44 1.32
132002--132035 15 2.3 15 89 0 50 0 23 5 70 1.09
136015--136078 31 2.1 31 93 0 110 26 9 26 37 1.87
144791--144816 12 2.2 12 100 0 52 84 0 7 7 0.77
144820--144858 15 2.9 14 88 11 55 71 0 10 17 1.12
149305--149366 21 3.0 21 97 2 117 41 0 4 53 1.22
152319--152370 18 2.9 18 94 0 95 30 28 7 32 1.85
154726--154814 21 4.1 21 81 5 81 56 7 23 12 1.62
158957--158996 20 2.0 20 95 0 71 50 2 10 37 1.50
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Tables: 1
The End!