NC_058897.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_058897.1 Euphorbia pekinensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 162002
Tables: 1
This is table 1 of 1 ( 89 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
316--362 19 2.4 19 85 3 58 74 4 10 10 1.20
4298--4327 15 2.0 15 100 0 60 53 6 6 33 1.53
4922--5023 53 2.0 50 87 9 145 33 7 4 53 1.51
5443--5498 25 2.3 25 84 3 69 53 5 5 35 1.47
5694--5723 15 2.0 15 100 0 60 53 0 26 20 1.46
6330--6359 15 1.9 16 93 6 53 36 6 0 56 1.26
8934--8982 17 2.7 17 84 9 62 75 0 6 18 1.00
8940--8983 19 2.5 17 86 13 63 75 0 4 20 0.98
9462--9486 11 2.3 11 100 0 50 48 0 0 52 1.00
9667--9709 23 1.9 22 90 4 68 41 2 0 55 1.12
9670--9719 22 2.2 23 82 10 59 48 2 0 50 1.12
9756--9802 16 3.1 16 85 14 73 42 0 6 51 1.27
9759--9802 13 3.2 13 90 9 61 43 0 6 50 1.29
9830--9880 20 2.6 19 76 11 59 45 5 5 43 1.52
10184--10233 16 3.1 16 75 13 57 34 4 10 52 1.54
14458--14496 20 2.0 20 94 0 69 17 0 0 82 0.68
14458--14496 17 2.3 17 86 0 51 17 0 0 82 0.68
14702--14736 16 2.2 16 89 0 52 45 2 22 28 1.67
15843--15874 16 2.0 16 93 0 55 28 15 0 56 1.40
16742--16789 23 2.1 23 100 0 96 35 12 0 52 1.40
21161--21215 21 2.7 21 91 5 87 34 18 9 38 1.82
28632--28659 13 2.2 13 100 0 56 39 0 7 53 1.28
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
28667--28701 18 1.9 18 100 0 70 54 11 5 28 1.59
29871--30002 65 2.0 65 100 0 264 35 13 6 44 1.69
31074--31100 14 1.9 14 100 0 54 74 0 0 25 0.83
32681--32717 15 2.5 15 100 0 74 54 0 0 45 1.00
32786--32825 21 1.9 21 85 10 55 32 5 5 57 1.42
32879--32953 13 5.7 13 87 9 91 40 0 5 54 1.23
32879--32953 28 2.8 26 86 13 109 40 0 5 54 1.23
33074--33102 14 2.1 14 100 0 58 34 13 6 44 1.71
33526--33569 16 2.9 16 87 12 67 36 13 0 50 1.42
33528--33571 13 3.2 13 90 9 61 36 13 0 50 1.42
37981--38012 16 2.0 16 93 0 55 53 9 0 37 1.34
38208--38248 12 3.8 12 75 24 54 51 0 4 43 1.23
38206--38266 20 3.1 20 90 4 97 47 0 6 45 1.28
38212--38264 10 5.4 10 80 13 65 47 0 7 45 1.31
44649--44728 18 4.2 18 73 16 56 23 5 1 70 1.15
44691--44735 22 2.0 22 83 8 56 26 2 4 66 1.22
44801--44846 15 2.9 16 87 9 67 13 10 2 73 1.17
44952--44998 20 2.5 19 86 13 62 61 4 0 34 1.15
44960--44998 20 1.9 21 94 5 71 58 5 0 35 1.20
48436--48481 13 3.5 13 96 0 83 56 4 8 30 1.49
48570--48619 14 3.4 15 70 13 50 56 8 8 28 1.57
48581--48626 15 3.2 15 72 12 51 63 4 10 21 1.44
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
48569--48626 28 2.0 29 93 3 100 60 6 8 24 1.51
48949--48973 11 2.3 11 100 0 50 8 8 0 84 0.79
49701--49733 16 2.1 16 100 0 66 30 0 0 69 0.88
50569--50605 15 2.4 15 95 4 65 45 0 13 40 1.43
50728--50754 13 2.1 13 100 0 54 48 7 14 29 1.71
50875--50913 19 2.1 19 100 0 78 30 15 5 48 1.66
53006--53032 13 2.1 13 100 0 54 62 0 7 29 1.22
53030--53133 43 2.4 42 82 10 113 29 10 0 58 1.38
53235--53269 17 2.1 17 89 10 54 54 5 14 25 1.62
53420--53448 13 2.2 13 100 0 58 41 10 13 34 1.79
54668--54702 18 1.9 18 88 0 52 48 8 0 42 1.33
62011--62081 22 3.3 21 71 9 54 60 1 9 28 1.37
62066--62114 20 2.5 19 86 3 62 59 0 4 36 1.17
63375--63420 23 2.0 23 100 0 92 30 4 8 56 1.49
63384--63429 23 2.2 21 81 14 51 30 6 4 58 1.43
63411--63475 22 3.0 22 76 13 71 24 12 0 63 1.29
63438--63491 25 2.0 26 86 10 74 24 12 0 62 1.30
63594--63648 21 2.5 21 80 16 67 58 1 5 34 1.32
63567--63654 15 5.8 15 76 11 74 55 3 6 34 1.43
66508--66534 13 2.1 13 100 0 54 22 14 0 62 1.31
70293--70325 15 2.2 15 100 0 66 39 0 0 60 0.97
70452--70514 29 2.2 29 82 5 74 53 3 7 34 1.46
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
70502--70537 18 1.9 19 94 5 65 38 5 5 50 1.49
70590--70631 22 1.9 22 90 0 66 45 4 9 40 1.58
72014--72058 22 2.0 22 86 0 63 33 11 4 51 1.58
73257--73312 22 2.7 22 78 8 64 41 7 5 46 1.54
77024--77069 23 2.0 23 100 0 92 34 21 4 39 1.73
95328--95402 21 3.2 24 73 19 77 10 24 8 57 1.59
97746--97838 18 5.2 18 97 2 154 31 5 29 34 1.80
97746--97825 9 8.9 9 72 5 72 31 5 28 35 1.79
99978--100002 12 2.1 12 100 0 50 56 8 8 28 1.57
105600--105625 12 2.2 12 100 0 52 7 7 0 84 0.77
106448--106481 16 2.1 16 94 0 59 52 0 14 32 1.42
114924--114953 15 2.0 15 100 0 60 40 13 33 13 1.83
117072--117117 17 2.7 18 77 12 53 45 4 0 50 1.21
120370--120403 17 2.0 17 94 0 59 61 2 0 35 1.11
127570--127610 16 2.6 16 96 0 73 31 17 0 51 1.46
134226--134266 21 2.0 21 95 0 73 48 12 0 39 1.41
137275--137304 15 2.0 15 100 0 60 13 33 13 40 1.83
145747--145780 16 2.1 16 94 0 59 32 14 0 52 1.42
146603--146628 12 2.2 12 100 0 52 84 0 7 7 0.77
152226--152250 12 2.1 12 100 0 50 28 8 8 56 1.57
154390--154482 18 5.2 18 97 2 154 34 29 5 31 1.80
154403--154482 9 8.9 9 72 5 72 35 28 5 31 1.79
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
156826--156900 21 3.2 24 73 19 77 57 8 24 10 1.59
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Tables: 1
The End!