NC_059021.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_059021.1 Ardisia crenata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156540
Tables: 1
This is table 1 of 1 ( 39 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3599--3623 12 2.1 12 100 0 50 24 32 8 36 1.84
4171--4214 21 2.1 21 100 0 88 36 15 13 34 1.87
23148--23174 11 2.5 11 100 0 54 51 11 0 37 1.37
29836--29879 17 2.6 16 92 3 70 54 0 29 15 1.42
32197--32236 20 2.0 20 90 4 64 42 10 7 40 1.67
33489--33528 18 2.2 19 86 4 55 35 10 0 55 1.34
47361--47402 22 2.0 21 81 13 50 57 11 4 26 1.54
50532--50558 13 2.1 13 100 0 54 33 14 7 44 1.73
59976--60012 17 2.2 17 86 13 51 35 16 5 43 1.71
60415--60440 13 2.0 13 100 0 52 38 7 15 38 1.76
69596--69636 21 2.0 21 95 0 73 29 26 9 34 1.88
71219--71247 15 1.9 15 100 0 58 24 13 6 55 1.63
72299--72325 13 2.1 13 100 0 54 29 22 0 48 1.51
73491--73530 20 2.0 20 90 0 62 20 32 7 40 1.80
78877--78910 17 2.0 17 100 0 68 35 0 5 58 1.22
84526--84558 16 2.1 16 100 0 66 42 24 0 33 1.55
88263--88314 26 2.0 26 96 0 95 38 15 17 28 1.90
90909--90963 24 2.5 22 85 8 67 14 23 12 49 1.78
90931--90998 21 3.2 21 77 8 75 11 22 8 57 1.61
93331--93424 18 5.4 17 93 3 93 29 11 26 31 1.92
93342--93434 18 5.2 18 96 0 150 30 13 26 29 1.95
98789--98822 17 2.0 17 94 0 59 35 14 11 38 1.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
100632--100668 16 2.3 16 90 0 56 40 27 18 13 1.88
100796--100833 16 2.3 17 86 4 51 21 2 0 76 0.91
101339--101371 11 3.1 11 86 4 50 30 3 18 48 1.63
113781--113822 20 2.0 21 86 13 61 54 21 0 23 1.44
115085--115110 13 2.0 13 100 0 52 30 7 23 38 1.83
117404--117442 20 2.0 20 84 0 51 64 12 7 15 1.49
123026--123059 16 2.1 16 100 0 68 20 17 5 55 1.62
125694--125731 19 2.0 19 94 0 67 65 0 10 23 1.23
128273--128315 21 2.1 20 83 12 52 11 6 2 79 1.02
128626--128663 20 1.9 20 88 0 58 15 10 7 65 1.45
141801--141838 17 2.2 18 86 9 53 76 0 2 21 0.91
141966--142002 16 2.3 16 90 0 56 13 18 27 40 1.88
143812--143845 17 2.0 17 94 0 59 38 11 14 35 1.83
149200--149292 18 5.2 18 96 0 150 29 26 13 30 1.95
149210--149303 18 5.4 17 93 3 93 31 26 11 29 1.92
151636--151725 21 4.1 22 75 8 76 54 10 23 12 1.67
154320--154371 26 2.0 26 96 0 95 28 17 15 38 1.90
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Tables: 1
The End!