NC_059715.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_059715.1 Sargentodoxa cuneata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158094
Tables: 1
This is table 1 of 1 ( 53 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
27--64 18 2.1 19 85 14 53 55 0 0 44 0.99
4421--4471 25 2.1 24 82 10 59 50 11 9 27 1.70
4632--4666 12 2.9 12 91 0 61 22 0 0 77 0.78
7474--7506 15 2.4 14 90 10 50 54 0 21 24 1.45
10849--10873 12 2.1 12 100 0 50 60 0 24 16 1.36
31604--31636 8 4.0 8 92 7 57 48 0 24 27 1.51
31603--31637 17 2.1 17 100 0 70 45 0 22 31 1.53
33507--33545 15 2.8 13 82 14 51 46 7 5 41 1.55
33800--33826 14 1.9 14 100 0 54 40 0 0 59 0.98
39648--39704 29 2.0 29 93 3 98 24 33 22 19 1.97
42732--42760 15 1.9 15 100 0 58 17 27 34 20 1.95
49511--49547 13 2.8 13 91 4 56 40 0 5 54 1.24
49638--49667 14 2.1 14 100 0 60 26 6 6 60 1.47
57509--57534 13 2.0 13 100 0 52 38 0 15 46 1.46
59069--59108 20 2.0 20 95 0 71 45 7 15 32 1.74
59062--59109 15 3.3 15 80 16 57 41 10 14 33 1.80
66007--66064 29 2.0 28 83 12 73 70 0 6 22 1.10
71202--71244 23 1.9 22 85 4 59 62 6 4 25 1.40
77651--77713 31 2.0 31 96 0 117 31 14 12 41 1.83
80059--80101 18 2.4 18 80 7 52 46 9 0 44 1.35
83368--83396 14 2.0 15 93 6 51 41 10 0 48 1.37
84058--84102 15 3.0 15 100 0 90 46 6 6 40 1.56
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
84451--84479 15 1.9 15 100 0 58 27 6 3 62 1.37
88785--88853 15 4.6 15 100 0 138 59 13 13 14 1.62
91432--91520 21 4.1 21 91 5 126 13 24 10 51 1.71
93089--93132 21 2.1 21 100 0 88 22 18 18 40 1.91
93917--93955 18 2.2 18 90 0 60 33 7 25 33 1.84
101163--101216 22 2.6 21 77 16 60 68 0 1 29 1.00
101184--101216 11 2.8 12 90 9 59 75 0 0 24 0.80
101355--101398 19 2.3 20 80 7 56 22 9 0 68 1.18
110829--110882 14 4.0 13 88 7 63 35 0 0 64 0.94
110828--110876 22 2.2 21 82 13 55 34 0 0 65 0.93
110809--110883 19 4.1 18 79 10 71 34 1 0 64 1.02
111256--111285 14 2.1 14 100 0 60 60 13 13 13 1.60
111709--111743 17 2.1 17 100 0 70 48 11 11 28 1.74
112509--112586 39 2.0 39 100 0 156 53 5 38 2 1.37
112612--112644 16 2.1 16 94 0 57 33 18 15 33 1.92
112875--112908 14 2.4 14 90 0 50 32 0 2 64 1.08
112907--112953 13 3.7 13 74 5 51 74 2 6 17 1.12
132017--132094 39 2.0 39 100 0 156 2 38 5 53 1.37
132860--132894 17 2.1 17 100 0 70 28 11 11 48 1.74
133318--133347 14 2.1 14 100 0 60 13 13 13 60 1.60
133720--133788 19 3.7 19 77 13 63 65 0 0 34 0.93
133720--133788 14 5.1 13 82 6 57 65 0 0 34 0.93
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
133723--133794 22 3.2 23 79 15 71 63 0 1 34 1.03
133728--133794 19 3.6 18 78 21 68 62 0 1 35 1.04
143205--143248 19 2.3 20 80 7 56 68 0 9 22 1.18
143387--143419 11 2.8 12 90 9 59 24 0 0 75 0.80
143387--143440 23 2.6 21 77 16 60 29 1 0 68 1.00
150648--150686 18 2.2 18 90 0 60 33 25 7 33 1.84
151471--151514 21 2.1 21 100 0 88 40 18 18 22 1.91
153083--153171 21 4.1 21 91 5 126 51 10 24 13 1.71
155750--155818 15 4.6 15 100 0 138 14 13 13 59 1.62
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Tables: 1
The End!