NC_059761.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_059761.1 Styrax tonkinensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157934
Tables: 1
This is table 1 of 1 ( 52 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
89--118 13 2.3 13 100 0 60 36 6 0 56 1.26
4029--4058 15 2.0 15 100 0 60 46 6 13 33 1.69
6265--6305 20 2.0 22 85 9 59 65 4 4 24 1.32
6757--6818 10 6.3 11 75 20 66 46 0 0 53 1.00
6763--6820 29 2.0 29 100 0 116 44 0 0 55 0.99
9127--9167 10 4.1 10 100 0 82 48 0 19 31 1.49
10553--10587 16 2.2 16 94 0 61 54 0 22 22 1.45
21563--21592 15 2.0 15 93 0 51 33 10 20 36 1.86
30494--30531 19 2.0 19 89 0 58 42 2 7 47 1.46
32570--32601 17 1.9 16 93 6 55 53 0 12 34 1.39
33867--33891 11 2.3 11 100 0 50 36 0 0 64 0.94
33877--33921 17 2.5 17 85 7 54 42 2 0 55 1.12
42013--42042 15 2.0 15 100 0 60 13 33 33 20 1.91
44583--44610 14 2.0 14 100 0 56 35 0 7 57 1.26
46499--46525 12 2.2 12 100 0 54 48 14 7 29 1.71
48103--48148 21 2.2 21 100 0 92 32 4 4 58 1.37
49058--49112 12 4.4 13 76 15 53 40 7 0 52 1.29
49064--49117 25 2.1 26 89 3 83 42 5 0 51 1.25
54033--54062 15 2.0 15 93 0 51 20 3 0 76 0.92
59250--59299 25 2.0 25 100 0 100 36 12 20 32 1.89
59650--59679 13 2.4 13 94 5 53 36 16 0 46 1.47
61577--61603 13 2.1 13 100 0 54 33 0 0 66 0.92
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
68864--68899 18 2.0 18 88 0 54 50 11 13 25 1.75
69149--69180 16 2.0 16 100 0 64 50 6 12 31 1.65
70019--70049 15 2.1 15 93 0 53 58 6 3 32 1.40
70515--70548 17 2.0 17 94 0 59 38 14 5 41 1.70
70646--70692 15 3.1 15 100 0 94 40 6 19 34 1.77
73645--73687 15 3.0 15 80 10 54 30 0 0 69 0.88
80370--80400 16 1.9 16 93 0 53 38 9 6 45 1.63
83867--83896 13 2.2 14 94 5 53 30 0 10 60 1.30
92284--92338 24 2.5 22 85 8 67 14 23 12 49 1.78
92306--92373 21 3.2 21 77 8 75 11 22 8 57 1.61
94726--94815 18 5.2 18 88 4 132 31 8 25 34 1.87
94750--94814 9 7.2 9 75 0 67 32 7 27 32 1.85
94726--94815 36 2.6 36 92 5 150 31 8 25 34 1.87
102658--102695 18 2.1 18 90 0 58 23 7 7 60 1.51
112030--112059 15 2.0 15 93 0 51 23 20 6 50 1.71
115158--115199 20 2.0 21 86 13 61 54 21 0 23 1.44
115987--116027 18 2.2 19 86 4 57 43 0 2 53 1.13
118801--118837 18 1.9 18 89 10 56 67 0 5 27 1.12
123850--123933 14 6.8 13 70 25 58 66 0 0 33 0.92
123850--123930 21 4.1 19 76 23 87 65 0 0 34 0.93
123850--123930 17 4.4 18 79 19 87 65 0 0 34 0.93
123852--123929 38 2.0 38 90 9 122 65 0 0 34 0.93
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
129396--129444 24 2.0 24 88 0 71 22 2 8 67 1.28
129442--129477 15 2.4 15 95 0 63 44 5 5 44 1.50
133356--133385 15 2.0 15 93 0 51 50 6 20 23 1.71
142720--142757 18 2.1 18 90 0 58 60 7 7 23 1.51
150600--150689 18 5.2 18 88 4 132 34 25 8 31 1.87
150600--150673 9 8.2 9 72 0 58 33 27 8 31 1.86
150600--150689 36 2.6 36 92 5 150 34 25 8 31 1.87
153042--153131 21 4.1 22 75 8 76 54 10 23 12 1.67
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!