NC_059767.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_059767.1 Malva verticillata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158408
Tables: 1
This is table 1 of 1 ( 55 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5007--5044 12 3.4 11 85 10 51 18 2 7 71 1.23
8495--8534 21 1.9 21 89 0 62 40 10 10 40 1.72
8540--8579 21 1.9 21 84 0 53 27 12 0 60 1.33
9255--9301 24 2.0 25 83 8 62 38 8 2 51 1.45
9292--9335 12 3.8 12 81 3 54 43 0 0 56 0.99
10247--10282 17 2.1 17 90 10 56 44 5 0 50 1.25
10235--10298 27 2.3 26 79 15 67 42 6 0 51 1.27
10283--10330 23 2.1 23 100 0 96 39 4 4 52 1.40
14708--14797 38 2.4 38 96 3 164 50 0 14 35 1.43
14720--14783 22 3.2 22 60 32 52 43 0 17 39 1.49
37746--37779 13 2.5 13 90 4 50 64 0 0 35 0.94
37845--37885 14 2.9 14 88 3 64 53 0 0 46 1.00
44146--44179 17 2.0 17 100 0 68 76 5 0 17 0.98
46048--46082 16 2.2 16 89 0 52 68 0 5 25 1.11
47691--47742 20 2.6 20 82 11 63 57 0 1 40 1.10
47684--47753 27 2.6 27 80 11 72 57 1 1 40 1.17
47698--47767 36 2.0 35 88 2 104 60 1 2 35 1.21
48112--48169 20 2.8 20 81 2 53 39 8 5 46 1.57
50105--50264 80 2.0 80 93 2 277 28 15 30 26 1.96
50458--50487 15 2.0 15 100 0 60 53 0 13 33 1.40
53351--53386 15 2.3 15 90 4 54 66 0 5 27 1.13
59376--59433 29 2.0 29 100 0 116 41 17 13 27 1.87
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
66159--66232 19 3.7 20 87 8 98 55 0 12 32 1.37
66213--66285 14 5.5 13 75 18 53 56 2 10 30 1.48
66226--66252 13 2.1 13 100 0 54 62 0 7 29 1.22
69801--69844 15 3.1 15 90 6 65 36 6 6 50 1.56
70270--70308 17 2.3 17 86 8 53 30 7 2 58 1.39
70373--70404 15 2.1 15 94 0 55 71 9 0 18 1.12
84908--84946 15 2.8 13 88 11 60 58 2 0 38 1.12
91938--92006 21 3.3 21 87 2 95 11 24 8 55 1.64
94372--94461 18 5.2 18 90 4 132 30 8 25 35 1.86
94384--94460 9 8.6 9 72 0 55 29 10 27 32 1.90
95726--95750 12 2.1 12 100 0 50 44 0 16 40 1.47
97446--97495 20 2.5 20 84 15 75 46 4 4 46 1.40
97443--97510 24 3.0 24 76 22 67 47 2 2 47 1.32
97481--97509 14 2.1 14 100 0 58 51 0 0 48 1.00
102755--102782 14 2.0 14 100 0 56 14 14 0 71 1.15
102787--102812 13 2.0 13 100 0 52 30 0 15 53 1.42
110601--110662 32 1.9 32 96 0 115 38 22 9 29 1.86
127889--127928 20 2.0 21 85 5 55 27 7 0 65 1.20
132338--132362 13 1.9 13 100 0 50 20 0 8 72 1.10
132503--132540 19 2.0 19 94 0 67 52 7 23 15 1.69
134832--134893 32 1.9 32 96 0 115 29 9 22 38 1.86
142682--142707 13 2.0 13 100 0 52 53 15 0 30 1.42
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
142712--142739 14 2.0 14 100 0 56 71 0 14 14 1.15
147985--148013 14 2.1 14 100 0 58 48 0 0 51 1.00
147999--148050 20 2.5 22 84 15 83 46 3 3 46 1.39
147984--148051 24 3.0 24 74 24 67 47 2 2 47 1.32
149744--149768 12 2.1 12 100 0 50 40 16 0 44 1.47
151033--151110 18 4.3 18 93 0 129 33 26 10 29 1.89
151033--151122 36 2.6 36 87 5 132 35 25 8 30 1.86
151033--151109 9 8.6 9 72 0 55 33 27 9 29 1.88
151033--151122 18 5.2 17 90 4 103 35 25 8 30 1.86
153488--153576 21 4.1 21 84 5 90 53 10 23 12 1.68
153488--153556 21 3.3 21 87 2 95 55 8 24 11 1.64
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Tables: 1
The End!