NC_059849.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_059849.1 Gaultheria fragrantissima chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 176196
Tables: 1
This is table 1 of 1 ( 63 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
886--918 15 2.2 15 100 0 66 66 0 0 33 0.92
12686--12723 12 3.2 12 82 14 51 63 7 13 15 1.51
17858--18168 21 14.0 21 76 11 271 34 26 25 14 1.94
17999--18185 27 7.6 27 74 20 203 37 26 26 10 1.88
17977--18186 48 4.4 48 99 0 402 36 26 26 10 1.89
20523--20550 14 2.0 14 100 0 56 57 7 21 14 1.61
20795--20928 45 3.0 45 98 0 259 38 8 12 40 1.75
20978--21095 57 2.1 57 82 6 141 22 17 22 38 1.94
22095--22265 92 1.8 93 94 2 308 45 18 16 20 1.86
23273--23395 21 5.9 21 96 0 210 38 2 30 29 1.70
23527--23573 21 2.2 21 81 7 60 19 14 23 42 1.88
24286--24998 219 3.3 219 82 4 530 31 19 20 28 1.97
24411--25001 219 2.7 219 88 2 859 30 18 21 29 1.97
33045--33078 17 2.0 17 100 0 68 35 17 11 35 1.87
44267--44302 18 2.0 18 100 0 72 22 27 0 50 1.50
60667--60700 11 2.9 12 91 8 61 35 0 14 50 1.44
60725--60753 14 2.1 14 100 0 58 58 6 13 20 1.58
60727--60769 14 3.0 14 86 10 52 60 6 16 16 1.56
63408--63450 7 5.7 7 81 13 50 58 4 0 37 1.19
63403--63450 16 3.1 16 79 8 55 56 6 0 37 1.25
63409--63454 23 2.0 23 100 0 92 60 4 0 34 1.16
69656--69777 60 2.0 60 100 0 244 36 22 13 27 1.92
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
69897--69948 26 2.0 26 88 7 79 46 0 9 44 1.36
70103--70129 13 2.1 13 100 0 54 29 0 7 62 1.22
73818--73849 15 2.2 14 94 5 55 40 9 6 43 1.62
74100--74131 13 2.5 13 94 0 55 59 0 6 34 1.23
75041--75069 15 1.9 15 100 0 58 34 17 27 20 1.95
75362--75405 21 2.1 21 87 8 63 34 20 11 34 1.88
80833--80870 19 2.0 19 100 0 76 42 10 26 21 1.85
83377--83428 26 2.0 26 88 7 79 44 9 0 46 1.36
88176--88301 62 2.0 63 98 1 245 34 12 14 38 1.84
89799--89833 17 2.1 17 94 0 61 22 2 11 62 1.41
112837--112862 13 2.0 13 100 0 52 38 15 0 46 1.46
113003--113092 42 2.1 42 100 0 180 28 13 26 31 1.94
114753--114793 21 2.0 21 95 0 73 9 24 29 36 1.87
115043--115094 26 2.0 26 88 7 79 46 0 9 44 1.36
116239--116293 18 3.1 18 86 0 74 29 16 38 16 1.90
123737--123766 15 2.0 15 100 0 60 33 20 26 20 1.97
125707--125744 12 3.1 13 81 14 53 63 7 15 13 1.51
125779--125810 16 2.0 16 100 0 64 62 6 12 18 1.50
126432--126484 27 2.0 27 96 0 97 39 0 16 43 1.49
126665--126710 16 2.6 18 77 22 53 50 15 10 23 1.75
127992--128236 87 2.9 86 88 6 342 36 4 31 26 1.78
130963--131000 14 2.7 14 87 0 58 31 15 7 44 1.75
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
139317--139401 42 2.0 42 86 0 116 27 20 14 38 1.90
140168--140195 14 2.0 14 100 0 56 28 7 0 64 1.20
140447--140483 18 2.1 18 100 0 74 56 5 10 27 1.55
143684--143755 21 3.4 21 96 3 135 45 0 4 50 1.21
143749--143776 14 2.0 14 100 0 56 64 0 7 28 1.20
144543--144627 42 2.0 42 86 0 116 38 14 20 27 1.90
152944--152981 14 2.7 14 87 0 58 44 7 15 31 1.75
155708--155952 87 2.9 87 88 5 344 26 31 4 36 1.78
157234--157279 16 2.6 18 77 22 53 23 10 15 50 1.75
157460--157512 27 2.0 27 96 0 97 43 16 0 39 1.49
158134--158165 16 2.0 16 100 0 64 18 12 6 62 1.50
158202--158239 12 3.2 12 82 14 51 15 13 7 63 1.51
158200--158245 24 1.9 24 86 0 65 17 13 6 63 1.50
160178--160207 15 2.0 15 100 0 60 20 26 20 33 1.97
167651--167705 18 3.1 18 86 0 74 16 38 16 29 1.90
168850--168901 26 2.0 26 88 7 79 44 9 0 46 1.36
169151--169191 21 2.0 21 95 0 73 36 29 24 9 1.87
170852--170941 42 2.1 42 100 0 180 31 26 13 28 1.94
171082--171107 13 2.0 13 100 0 52 46 0 15 38 1.46
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!