NC_059880.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_059880.1 Corydalis bungeana strain 10_1 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 167629
Tables: 1
This is table 1 of 1 ( 53 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
166--204 19 2.1 19 85 0 51 33 7 2 56 1.41
242--298 29 2.0 29 85 0 78 59 1 3 35 1.25
364--393 15 2.0 15 100 0 60 60 6 6 26 1.47
3953--3982 15 2.0 15 100 0 60 46 13 6 33 1.69
4820--4857 19 2.0 19 100 0 76 42 26 26 5 1.76
4940--5007 18 3.8 18 94 0 109 29 20 25 25 1.99
5406--5436 15 2.1 15 93 0 53 22 25 12 38 1.90
8665--8690 13 2.0 13 100 0 52 46 15 0 38 1.46
9264--9289 13 2.0 13 100 0 52 38 7 7 46 1.61
16152--16184 17 1.9 17 100 0 66 30 12 18 39 1.87
18493--18531 19 2.1 19 100 0 78 28 10 0 61 1.28
18959--19008 23 2.1 24 88 7 75 50 0 0 50 1.00
19060--19109 10 5.2 10 71 9 50 48 4 0 48 1.20
42140--42247 11 9.5 11 66 16 51 37 5 0 57 1.22
42163--42249 2 47.5 2 70 24 50 40 4 0 55 1.21
42163--42249 9 9.6 9 68 19 56 40 4 0 55 1.21
42163--42250 7 12.1 7 68 27 51 39 4 0 55 1.20
42158--42271 26 4.2 26 69 16 70 35 6 0 57 1.30
42668--42696 14 2.1 14 100 0 58 27 6 0 65 1.18
42664--42752 23 4.0 22 76 18 76 33 6 1 58 1.32
42894--42924 14 2.2 14 100 0 62 41 6 6 45 1.55
43547--43582 17 2.2 17 95 5 65 75 2 11 11 1.16
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
47233--47299 20 3.3 20 97 0 125 55 0 5 38 1.25
54413--54438 13 2.0 13 100 0 52 69 15 0 15 1.20
58236--58296 27 2.2 27 94 2 104 31 16 3 49 1.62
62569--62617 5 9.8 5 80 8 55 40 4 2 53 1.32
62588--62637 11 4.5 11 80 16 50 44 2 6 48 1.39
63198--63227 15 2.0 15 100 0 60 53 6 6 33 1.53
65988--66013 13 2.0 13 100 0 52 46 7 7 38 1.61
66587--66612 13 2.0 13 100 0 52 38 0 15 46 1.46
68112--68161 25 2.0 25 92 0 82 38 14 20 28 1.91
68677--68745 17 4.2 16 71 23 54 39 0 2 57 1.13
71044--71091 21 2.3 21 82 10 55 45 8 8 37 1.64
77135--77193 27 2.1 30 81 9 70 27 1 3 67 1.16
78367--78396 15 2.0 15 93 0 51 33 16 13 36 1.88
79599--79658 23 2.5 23 84 13 68 43 0 1 55 1.10
83516--83540 13 1.9 13 100 0 50 40 12 16 32 1.84
84026--84080 12 4.4 13 81 9 53 45 0 3 50 1.19
84038--84080 12 3.6 12 90 6 61 44 0 4 51 1.22
84059--84100 18 2.4 17 77 18 50 45 0 2 52 1.13
91725--91773 24 2.0 24 84 0 62 26 28 14 30 1.95
92898--92924 13 2.1 13 100 0 54 40 0 0 59 0.98
94173--94214 21 2.0 21 90 4 66 21 7 4 66 1.35
94237--94261 12 2.1 12 100 0 50 16 8 0 76 1.02
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
94298--94352 28 2.0 28 82 13 69 36 3 10 49 1.56
101629--101748 24 5.2 24 80 14 128 11 24 8 55 1.62
101629--101742 21 5.1 21 86 3 102 12 24 7 55 1.63
112722--112755 16 2.1 16 94 0 59 52 0 14 32 1.42
123210--123239 15 2.0 15 100 0 60 73 0 0 26 0.84
127966--127995 15 2.0 15 100 0 60 40 20 26 13 1.89
151658--151691 16 2.1 16 94 0 59 32 14 0 52 1.42
162689--162738 21 2.4 20 87 9 73 60 10 20 10 1.57
162665--162784 24 5.2 24 80 14 128 55 8 24 11 1.62
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Tables: 1
The End!