NC_060313.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_060313.1 Inula racemosa chloroplast, complete sequence
Parameters: 2 7 7 80 10 50 500
Length: 152592
Tables: 1
This is table 1 of 1 ( 24 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2006--2040 17 2.1 17 100 0 70 34 0 5 60 1.21
2000--2043 12 3.7 12 79 11 54 34 0 4 61 1.16
9176--9207 15 2.1 15 100 0 64 62 6 18 12 1.50
24809--24833 12 2.1 12 100 0 50 60 8 8 24 1.52
29530--29565 18 2.0 18 100 0 72 61 0 5 33 1.19
30815--30850 18 2.0 18 100 0 72 44 11 0 44 1.39
47093--47134 21 2.0 21 100 0 84 28 28 0 42 1.56
50110--50134 1 25.0 1 100 0 50 0 0 0 100 0.00
51665--51694 15 2.0 15 93 0 51 36 16 13 33 1.88
54415--54446 16 2.0 16 100 0 64 43 25 0 31 1.55
56128--56177 25 2.0 25 96 0 91 26 8 30 36 1.85
58741--58788 20 2.3 21 92 7 89 45 4 4 45 1.41
62695--62738 21 2.1 21 100 0 88 56 4 9 29 1.50
65303--65327 12 2.1 12 100 0 50 40 8 16 36 1.77
67578--67618 21 2.0 21 95 0 73 31 24 9 34 1.88
90875--90970 18 5.4 17 88 5 95 27 9 27 36 1.87
90875--90970 36 2.7 36 83 0 120 27 9 27 36 1.87
106754--106814 32 1.9 32 93 0 104 40 22 8 27 1.82
109529--109619 45 2.0 45 91 0 146 47 10 14 27 1.77
112320--112361 21 2.0 21 95 0 75 19 0 30 50 1.48
112534--112583 24 2.1 24 96 0 91 44 0 42 14 1.44
123535--123582 24 2.0 24 100 0 96 50 4 16 29 1.64
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
129421--129481 32 1.9 32 93 0 104 27 8 22 40 1.82
145265--145360 18 5.3 18 88 0 120 36 27 9 27 1.87
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Tables: 1
The End!