NC_060460.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_060460.1 Ocimum kilimandscharicum chloroplast, complete sequence
Parameters: 2 7 7 80 10 50 500
Length: 151741
Tables: 1
This is table 1 of 1 ( 31 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4752--4806 24 2.5 22 85 8 67 14 23 12 49 1.78
4774--4841 21 3.2 21 77 8 75 11 22 10 55 1.65
7146--7235 18 5.2 17 92 4 94 31 8 24 35 1.86
7158--7235 18 4.3 18 95 0 138 30 10 25 33 1.89
14926--14956 15 2.1 15 100 0 62 32 6 12 48 1.67
14959--14989 11 2.8 11 95 0 53 32 6 16 45 1.72
14980--15016 17 2.2 16 86 13 56 29 0 24 45 1.53
22937--22997 31 2.0 31 93 0 104 40 21 9 27 1.85
26931--26971 11 3.5 12 84 12 50 75 2 21 0 0.92
30156--30184 12 2.4 12 100 0 58 44 20 0 34 1.52
30846--30875 15 2.0 15 93 0 51 20 16 26 36 1.93
33554--33578 12 2.1 12 100 0 50 60 32 0 8 1.26
45863--45923 31 2.0 31 93 0 104 27 9 21 40 1.85
53844--53878 17 2.0 18 94 5 63 48 22 0 28 1.51
53871--53901 11 2.8 11 95 0 53 45 16 6 32 1.72
53904--53934 15 2.1 15 100 0 62 48 12 6 32 1.67
53924--53967 23 1.9 23 85 0 61 59 6 6 27 1.49
61625--61702 18 4.3 18 95 0 138 33 25 10 30 1.89
61625--61714 18 5.2 17 92 4 94 35 24 8 31 1.86
64037--64090 21 2.6 21 82 11 74 59 11 20 9 1.59
64019--64108 21 4.1 22 75 8 67 53 11 23 12 1.70
76964--77005 22 2.0 21 90 4 66 33 0 0 66 0.92
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
76967--77009 13 3.4 13 87 3 61 37 0 0 62 0.95
81409--81441 17 1.9 17 100 0 66 60 6 12 21 1.53
97433--97470 15 2.6 15 95 4 69 44 0 21 34 1.52
113099--113127 13 2.2 13 100 0 58 55 0 6 37 1.27
125671--125762 30 3.1 30 90 6 159 33 2 28 35 1.69
127018--127048 16 1.9 16 93 0 53 29 16 16 38 1.90
128117--128162 21 2.2 21 100 0 92 28 26 15 30 1.96
135954--135994 21 2.0 21 95 0 73 29 26 9 34 1.88
151410--151444 17 2.1 17 100 0 70 22 5 11 60 1.52
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Tables: 1
The End!