NC_060521.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_060521.1 Plantago asiatica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 164993
Tables: 1
This is table 1 of 1 ( 40 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7914--7990 38 2.1 37 90 4 120 44 9 19 27 1.81
12037--12062 13 2.0 13 100 0 52 38 23 0 38 1.55
20424--20448 12 2.1 12 100 0 50 28 16 16 40 1.89
29188--29212 12 2.1 12 100 0 50 32 32 0 36 1.58
29419--29466 16 3.0 16 100 0 96 43 12 18 25 1.85
55666--55830 41 4.1 39 79 11 181 40 10 16 31 1.84
55671--55816 41 3.6 41 87 4 199 40 10 17 31 1.84
55747--55816 23 3.3 23 62 25 62 41 11 15 31 1.83
56010--56052 19 2.3 19 100 0 86 25 27 4 41 1.75
56944--57151 15 13.9 15 83 4 258 31 11 24 33 1.90
56929--57151 45 5.0 45 85 1 295 32 11 23 32 1.91
59363--59399 17 2.2 17 100 0 74 10 16 0 72 1.10
64197--64233 16 2.2 17 90 4 58 32 5 10 51 1.60
64960--64984 11 2.3 11 100 0 50 64 0 0 36 0.94
66360--66476 60 2.0 60 91 0 189 51 15 11 22 1.74
68071--68098 10 2.8 10 100 0 56 17 10 0 71 1.14
73897--73937 21 1.9 22 85 5 57 48 4 12 34 1.62
84909--84955 23 2.0 23 87 0 67 48 10 10 29 1.71
85483--85522 10 4.0 10 93 6 64 72 0 10 17 1.11
85483--85524 21 2.0 22 90 4 68 71 0 9 19 1.13
87481--87559 21 3.6 21 76 11 70 11 25 7 55 1.61
89867--89926 18 3.7 18 68 25 60 25 15 33 26 1.95
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
93528--93588 31 2.0 31 96 0 113 27 9 22 39 1.86
109044--109100 15 3.8 15 95 0 105 59 8 19 12 1.58
110467--110496 9 3.2 9 95 4 51 66 0 20 13 1.24
119106--119133 14 2.0 14 100 0 56 50 21 0 28 1.49
123268--123309 20 2.0 21 86 13 61 54 23 0 21 1.44
125108--125153 24 1.9 24 100 0 92 54 6 17 21 1.65
125556--125587 16 2.0 16 100 0 64 37 25 12 25 1.91
125559--125594 16 2.2 16 90 0 54 41 22 13 22 1.89
128827--128854 14 2.0 14 100 0 56 28 0 21 50 1.49
137464--137493 9 3.2 9 95 4 51 13 20 0 66 1.24
138838--138915 15 5.2 15 85 3 59 8 21 11 57 1.61
138860--138916 15 3.8 15 95 0 105 12 19 8 59 1.58
154372--154432 31 2.0 31 96 0 113 39 22 9 27 1.86
158037--158092 18 3.4 18 70 27 61 26 33 16 23 1.95
160418--160471 21 2.6 21 80 11 65 59 9 22 9 1.57
162437--162476 10 4.0 10 90 9 64 17 10 0 72 1.11
162435--162476 21 2.0 22 90 4 68 19 9 0 71 1.13
163004--163050 23 2.0 23 87 0 67 29 10 10 48 1.71
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Tables: 1
The End!