NC_061667.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_061667.1 Celastrus paniculatus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157119
Tables: 1
This is table 1 of 1 ( 24 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
278--307 15 2.0 15 93 0 51 53 6 16 23 1.66
5389--5419 13 2.4 13 100 0 62 45 6 0 48 1.28
13941--13970 16 1.9 15 93 6 51 40 10 13 36 1.78
14293--14321 11 2.5 12 88 11 51 31 0 6 62 1.22
37001--37041 14 2.8 15 89 10 59 48 0 0 51 1.00
37001--37041 10 4.1 11 79 20 54 48 0 0 51 1.00
37003--37049 16 3.0 16 90 3 69 48 0 2 48 1.13
37004--37052 15 3.2 15 91 2 71 51 0 2 46 1.12
37236--37265 14 2.1 15 93 6 53 70 0 6 23 1.11
37303--37348 18 2.6 18 82 6 58 50 4 4 41 1.42
47574--47617 14 3.1 14 78 15 54 59 0 20 20 1.39
54111--54141 15 2.1 15 100 0 62 29 12 6 51 1.65
63119--63145 14 1.9 14 100 0 54 37 7 18 37 1.79
66570--66609 12 3.2 13 77 22 50 75 0 10 15 1.05
69792--69824 16 2.1 16 94 0 57 48 6 3 42 1.43
84219--84256 19 2.0 19 89 0 58 39 7 23 28 1.83
90666--90748 21 3.7 23 75 18 77 13 22 9 54 1.68
90688--90755 21 3.2 21 82 0 82 11 22 7 58 1.57
93096--93137 18 2.3 18 88 8 59 30 7 26 35 1.83
100828--100858 12 2.5 12 94 5 53 6 12 0 80 0.89
125418--125451 16 2.2 15 94 5 59 58 0 0 41 0.98
141829--141859 12 2.5 12 94 5 53 80 0 12 6 0.89
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
149550--149591 18 2.3 18 88 8 59 35 26 7 30 1.83
151933--152021 21 4.1 21 81 5 81 56 8 22 12 1.64
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Tables: 1
The End!