NC_062416.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_062416.1 Paederia foetida chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153591
Tables: 1
This is table 1 of 1 ( 35 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6746--6775 15 2.0 15 93 0 51 40 10 10 40 1.72
6940--6969 15 2.0 15 100 0 60 46 26 13 13 1.80
8895--8925 16 1.9 16 93 0 53 38 0 3 58 1.15
9943--9993 26 2.0 26 96 0 93 56 7 3 31 1.46
22714--22773 30 2.0 30 90 0 93 31 18 5 45 1.71
30041--30078 19 2.0 19 100 0 76 42 21 5 31 1.75
31362--31462 53 1.9 53 87 0 148 39 6 5 47 1.55
32075--32119 22 2.0 22 100 0 90 26 13 4 55 1.57
36418--36443 13 2.0 13 100 0 52 38 15 7 38 1.76
40374--40402 15 1.9 15 100 0 58 17 27 34 20 1.95
45143--45177 17 2.1 17 100 0 70 28 5 22 42 1.76
46004--46035 16 2.0 16 100 0 64 25 18 0 56 1.42
48995--49025 9 3.6 9 91 8 55 19 0 12 67 1.22
48989--49025 17 2.2 17 95 0 65 18 0 13 67 1.23
50711--50736 12 2.2 12 100 0 52 23 7 7 61 1.49
56184--56214 10 3.1 10 100 0 62 51 0 9 38 1.35
56223--56260 20 1.9 20 94 0 67 28 23 13 34 1.92
56249--56278 15 2.0 15 93 0 51 40 16 6 36 1.75
58548--58576 14 2.1 14 100 0 58 27 6 6 58 1.50
58557--58600 19 2.4 19 96 3 81 31 4 11 52 1.57
63163--63188 13 2.0 13 100 0 52 53 0 0 46 1.00
67082--67110 15 1.9 15 100 0 58 20 3 27 48 1.66
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
67477--67517 21 2.0 21 100 0 82 29 24 9 36 1.87
81178--81209 16 2.0 16 100 0 64 31 6 0 62 1.20
81750--81775 12 2.2 12 100 0 52 34 7 7 50 1.60
88392--88446 24 2.5 22 85 8 67 14 23 12 49 1.78
88410--88480 21 3.5 20 77 7 79 11 21 8 59 1.58
90842--90881 18 2.2 18 95 0 71 32 7 25 35 1.84
119954--119979 11 2.4 11 100 0 52 69 0 0 30 0.89
126586--126639 28 2.0 28 82 10 67 3 24 1 70 1.13
126591--126639 13 3.6 14 76 20 50 2 24 2 71 1.07
126601--126649 15 3.5 14 78 10 55 0 24 4 71 1.03
146388--146427 18 2.2 18 95 0 71 35 25 7 32 1.84
148789--148859 21 3.4 21 79 9 83 59 8 21 11 1.58
148788--148877 21 4.0 22 75 10 76 55 10 22 12 1.66
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!