NC_062586.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_062586.1 Vigna umbellata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151821
Tables: 1
This is table 1 of 1 ( 35 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3174--3224 21 2.5 21 93 3 86 47 19 9 23 1.79
4487--4523 18 2.1 18 89 0 56 21 10 10 56 1.64
9758--9806 22 2.2 23 85 3 64 26 12 2 59 1.44
15511--15548 2 19.0 2 88 0 58 44 5 0 50 1.24
16041--16081 21 2.0 21 95 0 73 41 19 4 34 1.73
16091--16126 18 2.0 18 94 0 63 52 0 19 27 1.46
16934--16964 12 2.6 12 94 0 53 54 0 0 45 0.99
17471--17502 17 1.9 16 100 0 55 46 6 3 43 1.44
17579--17603 13 1.9 13 100 0 50 16 12 0 72 1.13
27403--27430 14 2.0 14 100 0 56 28 14 0 57 1.38
32782--32817 17 2.1 17 94 0 63 50 11 11 27 1.72
34253--34295 21 2.0 21 100 0 86 32 9 13 44 1.76
47702--47750 18 2.6 18 83 6 62 67 4 8 20 1.34
54390--54419 14 2.1 14 93 0 51 43 20 0 36 1.52
58772--58797 13 2.0 13 100 0 52 30 15 7 46 1.74
60921--60966 20 2.4 19 85 3 56 73 2 6 17 1.14
65153--65178 13 2.0 13 100 0 52 30 15 0 53 1.42
67316--67359 17 2.6 17 96 0 79 47 9 15 27 1.76
67316--67366 17 3.0 17 91 0 75 49 7 15 27 1.72
81732--81783 16 3.2 16 100 0 104 17 13 23 46 1.83
87301--87350 21 2.4 21 86 0 73 10 22 10 58 1.60
89725--89800 9 8.4 9 82 0 98 34 6 28 30 1.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
89718--89800 36 2.3 36 95 0 148 33 6 27 32 1.81
89718--89791 18 4.1 18 100 0 148 33 5 27 33 1.80
92441--92469 10 2.9 10 100 0 58 51 0 17 31 1.45
109524--109561 20 1.9 20 84 10 51 55 23 2 18 1.55
114261--114290 10 2.9 10 95 5 51 40 6 0 53 1.27
115748--115792 22 2.0 22 100 0 90 33 4 4 57 1.38
120443--120484 21 2.0 21 100 0 84 47 14 4 33 1.65
121560--121589 15 2.0 15 100 0 60 60 0 13 26 1.34
140782--140810 10 2.9 10 100 0 58 31 17 0 51 1.45
143451--143526 9 8.4 9 82 0 98 30 28 6 34 1.83
143460--143533 18 4.1 18 100 0 148 33 27 5 33 1.80
145901--145950 21 2.4 21 86 0 73 58 10 22 10 1.60
151468--151519 16 3.2 16 100 0 104 46 23 13 17 1.83
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Tables: 1
The End!