NC_062934.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_062934.1 Magnolia obovata voucher S. Kim 1046 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160087
Tables: 1
This is table 1 of 1 ( 24 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1779--1812 17 2.0 17 100 0 68 11 17 17 52 1.73
6455--6485 15 2.1 15 100 0 62 41 19 12 25 1.87
14160--14205 22 2.1 22 84 8 58 17 4 4 73 1.15
14160--14205 23 2.0 22 87 4 65 17 4 4 73 1.15
31890--31925 17 2.1 17 100 0 72 16 0 11 72 1.12
50801--50840 20 2.0 20 100 0 80 40 20 15 25 1.90
53573--53610 19 2.0 19 100 0 76 15 5 21 57 1.57
62801--62836 15 2.3 16 90 4 56 50 8 2 38 1.47
62836--62871 17 2.1 17 100 0 72 47 16 5 30 1.70
72007--72050 21 2.1 21 91 8 72 29 25 13 31 1.94
73151--73199 15 3.3 15 74 20 50 57 0 16 26 1.40
83316--83364 24 2.0 24 92 0 80 28 36 12 22 1.90
87333--87376 21 2.1 21 91 0 70 0 31 0 68 0.90
90659--90689 15 2.1 15 100 0 62 19 32 0 48 1.49
92922--93010 21 4.1 21 91 5 126 13 24 10 51 1.71
95376--95432 24 2.4 24 100 0 114 33 8 24 33 1.86
113321--113386 18 3.4 18 70 25 62 36 12 21 30 1.90
117708--117753 22 2.1 22 100 0 92 30 8 0 60 1.26
132836--132874 18 2.2 18 100 0 78 23 10 15 51 1.73
132841--132880 18 2.2 18 90 0 62 25 12 15 47 1.80
134892--134957 18 3.4 18 70 25 62 30 21 12 36 1.90
152846--152902 24 2.4 24 100 0 114 33 24 8 33 1.86
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
155268--155356 21 4.1 21 91 5 126 51 10 24 13 1.71
157589--157619 15 2.1 15 100 0 62 48 0 32 19 1.49
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!