NC_063110.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_063110.1 Scopolia carniolica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156316
Tables: 1
This is table 1 of 1 ( 38 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3685--3722 19 2.0 19 100 0 76 42 10 21 26 1.85
9510--9537 14 2.0 14 100 0 56 28 7 7 57 1.52
16754--16786 17 2.0 16 94 5 57 18 15 0 66 1.25
28269--28307 11 3.5 11 78 0 51 51 0 33 15 1.44
28269--28313 22 2.0 22 100 0 90 46 0 31 22 1.52
28886--28911 12 2.2 12 100 0 52 38 0 30 30 1.58
33379--33427 13 4.0 13 82 15 68 38 6 2 53 1.38
43538--43562 11 2.3 11 100 0 50 76 0 0 24 0.80
52703--52727 11 2.3 11 100 0 50 24 0 0 76 0.80
53241--53283 21 2.0 21 100 0 86 58 9 9 23 1.58
62760--62794 17 2.1 17 100 0 70 60 11 11 17 1.59
63184--63228 22 2.0 22 100 0 90 37 13 4 44 1.64
69093--69142 25 2.0 25 84 7 66 56 8 2 34 1.40
70213--70245 16 2.0 17 94 5 59 42 15 0 42 1.46
70323--70363 21 2.0 21 90 0 64 29 24 9 36 1.87
70664--70695 16 2.0 16 93 0 55 31 6 21 40 1.78
71806--71830 12 2.1 12 100 0 50 40 12 16 32 1.84
74081--74109 14 2.1 14 100 0 58 37 6 6 48 1.57
80268--80319 23 2.3 23 96 0 95 46 9 11 32 1.73
91304--91375 24 3.1 24 92 4 112 12 23 11 52 1.71
91304--91410 24 4.8 22 83 6 92 13 24 11 51 1.73
91326--91417 21 4.2 21 78 9 78 11 22 9 55 1.65
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
93779--93838 18 3.3 18 88 0 93 31 10 25 33 1.89
101637--101691 18 3.2 17 85 10 76 30 3 5 60 1.37
101642--101715 35 2.1 34 83 11 89 33 1 9 55 1.41
101665--101719 18 3.1 18 84 7 69 34 0 12 52 1.40
109294--109359 32 2.1 32 94 0 114 42 22 9 25 1.83
114049--114087 20 2.0 20 85 10 53 56 23 0 20 1.42
129531--129567 18 2.1 18 100 0 74 43 0 16 40 1.48
133437--133502 32 2.1 32 94 0 114 25 9 22 42 1.83
141077--141131 18 3.1 18 82 10 69 52 12 0 34 1.40
141081--141154 35 2.1 34 83 11 89 55 9 1 33 1.41
141105--141159 17 3.2 17 87 7 76 60 5 3 30 1.37
141105--141159 18 3.2 18 82 12 71 60 5 3 30 1.37
148958--149017 18 3.3 18 88 0 93 33 25 10 31 1.89
151397--151450 21 2.6 21 82 11 74 59 11 20 9 1.59
151380--151449 21 3.4 19 72 16 59 57 8 22 11 1.61
151421--151492 24 3.1 24 92 4 112 52 11 23 12 1.71
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Tables: 1
The End!