NC_063321.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_063321.1 Carpesium abrotanoides chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  151394

    Tables:   1   

    This is table  1  of  1  ( 21 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  88--127                            10       4.0      10          96        0         71      30   12   7    50   1.68

  3017--3070                         27       2.0      27          100       0         108     37   7    14   40   1.74

  12046--12102                       21       2.9      21          75        15        68      59   7    14   19   1.57

  25070--25105                       17       2.1      17          100       0         72      30   11   11   47   1.74

  50898--50927                       15       2.0      15          93        0         51      36   16   13   33   1.88

  58000--58047                       20       2.3      21          92        7         89      45   4    4    45   1.41

  59734--59769                       18       2.0      18          94        0         63      36   11   8    44   1.70

  60750--60797                       24       2.0      24          95        0         87      29   12   10   47   1.74

  64313--64357                       22       2.0      22          100       0         90      44   8    13   33   1.75

  65454--65483                       14       2.1      14          100       0         60      36   13   13   36   1.84

  66876--66916                       21       2.0      21          95        0         73      31   24   9    34   1.88

  79500--79524                       12       2.1      12          100       0         50      40   28   0    32   1.57

  90268--90336                       9        7.7      9           67        6         50      28   13   24   33   1.93

  90274--90336                       18       3.5      18          95        0         117     28   12   25   33   1.92

  105958--106019                     32       1.9      32          93        0         106     41   22   8    27   1.82

  108734--108830                     51       1.9      51          87        4         142     49   9    11   29   1.70

  111482--111521                     21       1.9      21          94        0         71      22   2    32   42   1.67

  123432--123463                     15       2.1      15          94        0         55      71   6    0    21   1.07

  128468--128529                     32       1.9      32          93        0         106     27   8    22   41   1.82

  144151--144213                     18       3.5      18          95        0         117     33   25   12   28   1.92

  144151--144219                     9        7.7      9           67        6         50      33   24   13   28   1.93
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!