NC_063471.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_063471.1 Desmostachya bipinnata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 134533
Tables: 1
This is table 1 of 1 ( 37 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6219--6259 19 2.2 19 95 0 73 80 12 0 7 0.90
12538--12570 8 4.0 8 92 7 57 36 24 0 39 1.56
12538--12572 17 2.1 17 100 0 70 37 22 0 40 1.55
12813--12848 18 2.0 18 94 0 63 38 30 0 30 1.58
13273--13323 25 2.0 25 100 0 102 41 19 3 35 1.70
14726--14775 25 2.0 25 100 0 100 40 8 4 48 1.51
14809--14833 11 2.3 11 100 0 50 40 0 16 44 1.47
16599--16641 21 2.0 21 100 0 86 37 13 9 39 1.78
17011--17073 31 2.0 31 100 0 126 34 12 6 46 1.68
17474--17504 15 2.0 16 93 6 55 12 19 0 67 1.22
17476--17504 10 2.7 11 89 10 51 13 17 0 68 1.20
25085--25124 21 1.9 21 100 0 80 27 27 15 30 1.96
27050--27133 21 4.0 21 87 0 105 39 15 30 14 1.87
27136--27232 21 4.6 21 72 21 69 44 17 24 13 1.85
27132--27261 42 3.1 41 73 16 113 40 19 26 14 1.90
27282--27343 21 3.0 21 78 4 63 43 14 27 14 1.84
27399--27424 12 2.2 12 100 0 52 42 15 34 7 1.75
33063--33090 14 2.0 14 100 0 56 57 7 7 28 1.52
33111--33166 28 2.0 28 100 0 112 35 17 17 28 1.93
33619--33658 19 2.1 19 95 0 71 32 12 12 42 1.80
36287--36334 23 2.1 23 100 0 96 62 0 16 20 1.33
42117--42148 16 2.0 16 100 0 64 56 6 12 25 1.59
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
50349--50382 17 2.0 17 94 0 59 35 2 8 52 1.47
50322--50375 26 2.1 26 100 0 108 38 3 7 50 1.48
50505--50555 25 2.0 25 100 0 102 23 15 15 45 1.85
51520--51557 19 2.0 19 94 0 67 50 23 10 15 1.75
58137--58186 24 2.1 24 100 0 100 52 16 8 24 1.70
60580--60635 27 2.1 27 100 0 112 25 17 25 32 1.97
62439--62471 15 2.2 15 100 0 66 60 6 27 6 1.44
62832--62880 24 2.0 24 100 0 98 44 20 8 26 1.79
64108--64149 19 2.3 18 95 4 75 28 9 11 50 1.70
65268--65417 21 7.0 21 85 6 185 36 25 6 32 1.80
65288--65417 42 3.1 42 90 0 206 36 26 6 30 1.81
76935--76974 20 2.0 20 100 0 80 55 0 20 25 1.44
90186--90295 55 2.0 55 100 0 220 32 12 20 34 1.90
109380--109432 24 2.2 24 96 0 97 45 1 11 41 1.51
123984--124093 55 2.0 55 94 3 195 36 20 11 31 1.88
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Tables: 1
The End!