NC_063474.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_063474.1 Prinsepia uniflora chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159179
Tables: 1
This is table 1 of 1 ( 58 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
295--330 17 2.1 18 94 5 65 69 5 5 19 1.29
1854--1897 9 4.7 10 81 13 58 38 0 9 52 1.33
4732--4768 18 2.1 18 100 0 74 40 0 5 54 1.24
4737--4776 11 4.0 11 75 24 52 37 0 7 55 1.29
7449--7501 21 2.4 21 87 6 79 35 3 7 52 1.48
7500--7544 19 2.4 19 96 3 83 44 4 0 51 1.21
7543--7575 8 4.1 8 85 14 50 63 0 0 36 0.95
7547--7577 16 1.9 16 100 0 62 64 0 0 35 0.94
10249--10288 16 2.4 16 87 8 53 20 10 0 70 1.16
13635--13662 14 2.0 14 100 0 56 57 7 7 28 1.52
13709--13742 17 2.0 17 100 0 68 41 11 17 29 1.85
21629--21658 15 2.0 15 93 0 51 36 13 16 33 1.88
21634--21663 15 2.0 15 93 0 51 33 13 23 30 1.93
23781--23806 13 2.0 13 100 0 52 53 0 15 30 1.42
29454--29480 13 2.1 13 100 0 54 37 0 0 62 0.95
34107--34144 19 2.1 19 90 9 62 44 0 13 42 1.43
34187--34223 14 2.6 14 91 0 56 43 0 0 56 0.99
34207--34248 20 2.1 20 90 0 66 45 0 4 50 1.23
34649--34681 16 2.0 17 94 5 59 24 12 0 63 1.28
34656--34697 21 2.0 21 90 9 68 23 14 0 61 1.32
34884--34930 13 3.4 14 75 13 53 68 0 8 23 1.17
38218--38251 16 2.1 16 100 0 68 50 5 11 32 1.63
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
38877--38948 25 2.9 25 93 4 119 34 0 6 58 1.25
38994--39042 17 2.9 16 82 8 62 57 0 0 42 0.99
47714--47755 22 1.9 22 85 0 57 50 9 11 28 1.70
51962--52065 49 2.1 48 87 5 147 45 7 7 39 1.62
53017--53048 16 2.0 16 100 0 64 18 12 12 56 1.67
58332--58357 13 2.0 13 100 0 52 38 0 15 46 1.46
60075--60106 16 2.0 16 93 0 55 15 12 6 65 1.44
68416--68467 26 2.0 26 100 0 104 34 7 23 34 1.83
71016--71054 21 1.9 21 94 5 71 33 23 10 33 1.88
74547--74577 16 1.9 16 93 0 53 19 32 6 41 1.77
75087--75211 59 2.0 61 89 6 191 29 9 18 42 1.82
75429--75463 16 2.3 15 90 5 52 51 5 8 34 1.56
77600--77635 18 2.0 18 100 0 72 38 5 11 44 1.63
92140--92207 21 3.2 21 82 0 82 11 22 7 58 1.57
94571--94620 18 2.8 18 87 0 82 32 8 26 34 1.85
97607--97641 17 2.1 17 100 0 70 48 5 0 45 1.26
102135--102159 12 2.1 12 100 0 50 8 8 0 84 0.79
102208--102279 24 3.0 24 100 0 144 16 29 16 37 1.91
110914--110977 31 2.1 31 96 0 119 39 25 9 26 1.86
116330--116363 12 2.9 12 95 4 61 61 0 0 38 0.96
116328--116365 6 6.5 6 81 6 51 65 0 0 34 0.93
116323--116355 10 3.4 10 87 8 50 63 0 0 36 0.95
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
117134--117167 14 2.5 14 95 4 61 55 0 0 44 0.99
117228--117270 12 3.7 12 87 6 70 51 0 0 48 1.00
117227--117273 23 2.0 23 100 0 94 51 0 0 48 1.00
117338--117369 12 2.7 12 95 0 55 40 0 0 59 0.97
118181--118209 14 2.1 14 100 0 58 79 0 0 20 0.74
131066--131107 20 2.0 20 86 4 57 19 4 2 73 1.12
135442--135505 31 2.1 31 96 0 119 26 9 25 39 1.86
144140--144211 24 3.0 24 100 0 144 37 16 29 16 1.91
144260--144284 12 2.1 12 100 0 50 84 0 8 8 0.79
148778--148812 17 2.1 17 100 0 70 45 0 5 48 1.26
148784--148837 20 2.7 21 88 5 85 46 0 3 50 1.19
148782--148843 20 3.2 19 77 22 67 46 0 3 50 1.17
151799--151848 18 2.8 18 87 0 82 34 26 8 32 1.85
154213--154301 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!