NC_063551.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_063551.1 Geranium thunbergii voucher TKMII-18-1 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155144
Tables: 1
This is table 1 of 1 ( 83 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
315--374 30 2.0 30 96 0 111 20 20 18 41 1.90
1919--1948 15 2.0 15 100 0 60 53 6 20 20 1.67
2071--2105 16 2.2 16 89 0 52 22 22 0 54 1.45
6371--6417 16 2.9 16 100 0 94 12 29 0 57 1.36
6750--6793 14 3.0 15 93 6 81 54 6 13 25 1.63
8352--8413 25 2.6 25 80 10 76 45 6 0 48 1.28
13364--13398 12 2.9 12 95 0 61 34 17 22 25 1.96
17264--17304 20 2.0 20 85 9 55 41 4 7 46 1.53
23328--23365 20 1.9 20 88 0 58 47 10 15 26 1.78
31546--31594 21 2.3 21 89 6 73 20 30 20 28 1.98
31691--31744 27 2.0 27 92 0 90 16 35 12 35 1.87
31705--31756 21 2.5 21 87 0 77 15 38 9 36 1.80
35321--35368 17 2.8 17 96 3 87 70 0 12 16 1.16
39322--39347 13 2.0 13 100 0 52 46 0 23 30 1.53
39341--39387 15 3.1 15 87 0 76 55 6 12 25 1.61
41931--41983 23 2.3 23 100 0 106 54 3 7 33 1.46
42392--42458 32 2.1 32 97 0 125 17 26 17 37 1.93
44457--44500 22 2.0 22 86 8 63 54 2 20 22 1.56
45680--45718 20 2.0 20 100 0 78 25 10 5 58 1.51
46009--46035 9 3.0 9 100 0 54 22 11 22 44 1.84
46150--46189 12 3.3 12 96 0 71 47 10 7 35 1.65
55064--55098 18 1.9 18 100 0 70 17 22 31 28 1.96
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
58486--58519 6 5.7 6 85 0 50 17 20 26 35 1.95
58483--58519 12 3.1 12 100 0 74 16 24 24 35 1.95
60550--60604 9 5.6 10 81 16 62 1 18 10 69 1.27
60543--60604 19 3.2 19 86 9 81 3 17 11 67 1.34
60543--60594 9 5.7 9 86 4 68 3 15 11 69 1.32
60576--60621 21 2.2 21 81 11 51 0 19 13 67 1.23
60606--60667 30 2.1 30 100 0 124 6 19 12 61 1.53
66486--66515 15 2.0 15 100 0 60 53 6 20 20 1.67
68910--68951 21 2.0 21 100 0 84 42 19 4 33 1.72
82553--82598 12 3.8 12 79 0 56 8 26 10 54 1.64
82551--82617 24 2.8 24 84 4 82 13 23 10 52 1.71
82638--82702 18 3.6 18 80 0 67 36 20 9 33 1.84
85815--85875 29 2.1 29 100 0 122 21 16 13 49 1.79
87582--87615 11 3.1 11 91 8 52 52 0 5 41 1.25
90735--90779 22 2.0 22 100 0 90 8 17 55 17 1.67
91088--91112 9 2.8 9 100 0 50 56 0 0 44 0.99
91170--91229 23 2.6 24 74 15 63 68 0 6 25 1.14
92094--92133 21 1.9 21 94 0 71 40 10 22 27 1.86
95115--95179 19 3.4 19 85 6 69 23 4 12 60 1.51
95129--95181 19 2.8 19 91 2 81 22 1 13 62 1.40
96102--96241 74 1.9 74 93 0 244 20 31 27 21 1.98
102836--102936 17 6.0 17 91 2 168 33 23 11 30 1.91
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
102836--102936 50 2.0 51 92 1 168 33 23 11 30 1.91
110099--110136 19 2.0 19 100 0 76 36 10 0 52 1.36
111125--111149 8 3.1 8 100 0 50 40 24 0 36 1.55
120602--120626 13 1.9 13 100 0 50 40 20 8 32 1.81
121571--121810 81 3.0 81 96 0 444 33 12 23 30 1.92
121945--122004 27 2.2 27 84 0 75 35 13 28 23 1.92
121963--122066 45 2.3 45 91 0 163 38 14 25 21 1.91
121896--122035 72 1.9 71 91 5 228 34 15 25 24 1.95
122038--122231 39 5.0 39 97 0 361 44 10 19 25 1.83
121993--122258 117 2.3 117 81 9 328 42 11 22 24 1.86
122252--122297 24 1.9 24 86 0 65 47 15 26 10 1.78
122902--122953 24 2.2 24 89 0 77 34 23 21 21 1.97
122966--123061 30 3.4 30 72 19 107 30 28 18 22 1.98
122988--123041 24 2.2 24 90 0 81 33 29 16 20 1.95
122966--123082 54 2.2 54 85 3 155 30 24 22 22 1.99
123284--123349 27 2.4 27 94 0 123 30 10 28 30 1.90
124133--124172 21 1.9 21 89 0 62 37 10 10 42 1.72
125554--125609 28 2.0 28 100 0 112 46 10 10 32 1.73
129446--129505 14 4.1 14 87 12 93 28 20 6 45 1.76
129444--129507 31 2.1 31 100 0 128 29 18 6 45 1.74
132663--132687 13 1.9 13 100 0 50 48 8 0 44 1.32
133982--134024 18 2.4 19 81 18 56 37 9 0 53 1.33
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
134259--134297 21 1.9 20 94 5 69 46 17 12 23 1.83
134554--134634 35 2.2 36 80 4 92 55 12 14 17 1.69
135103--135156 27 2.0 27 100 0 108 33 22 11 33 1.89
135570--135599 14 2.1 14 100 0 60 56 16 6 20 1.62
136384--136417 17 2.0 17 100 0 68 58 5 17 17 1.57
137274--137324 12 4.2 12 75 9 50 37 37 3 21 1.72
137482--137535 23 2.4 23 84 12 76 44 1 0 53 1.11
140248--140287 21 1.9 21 94 0 71 27 22 10 40 1.86
141152--141211 23 2.6 24 74 15 63 25 6 0 68 1.14
141269--141293 9 2.8 9 100 0 50 44 0 0 56 0.99
141602--141646 22 2.0 22 100 0 90 17 55 17 8 1.67
144766--144799 11 3.1 11 91 8 52 41 5 0 52 1.25
146506--146566 29 2.1 29 100 0 122 49 13 16 21 1.79
149679--149721 18 2.4 18 84 0 59 37 2 20 39 1.66
149688--149738 18 2.8 18 81 0 57 35 9 21 33 1.86
149782--149830 24 2.0 24 92 0 80 51 12 28 8 1.68
149783--149828 12 3.8 12 79 0 56 54 10 26 8 1.64
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Tables: 1
The End!