NC_063571.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_063571.1 Inula linariifolia chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 150812
Tables: 1
This is table 1 of 1 ( 22 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
81--105 10 2.5 10 100 0 50 32 8 8 52 1.60
15812--15851 16 2.5 16 100 0 80 42 7 27 22 1.80
24843--24877 17 2.1 17 100 0 70 31 11 11 45 1.76
24907--24931 12 2.1 12 100 0 50 60 8 8 24 1.52
41557--41596 21 2.0 21 85 5 55 65 12 0 22 1.26
47146--47216 31 2.4 31 95 4 128 45 12 8 33 1.73
50387--50416 15 2.0 15 93 0 51 36 16 13 33 1.88
57267--57306 20 2.0 20 100 0 80 55 5 5 35 1.44
57499--57576 20 4.2 20 74 25 91 44 5 5 44 1.48
57503--57566 32 2.0 32 100 0 128 43 6 6 43 1.54
59248--59282 18 1.9 18 94 0 61 37 8 8 45 1.65
63779--63823 22 2.0 22 100 0 90 44 8 13 33 1.75
64132--64161 14 2.1 14 100 0 60 50 0 13 36 1.42
64932--64961 14 2.1 14 100 0 60 36 13 13 36 1.84
66295--66335 21 2.0 21 95 0 73 31 24 9 34 1.88
89660--89728 9 7.7 9 67 6 50 28 13 24 33 1.93
89666--89728 18 3.5 18 95 0 117 28 12 25 33 1.92
105356--105417 32 1.9 32 93 0 106 41 22 8 27 1.82
122379--122418 21 1.9 21 94 0 71 42 32 2 22 1.67
127871--127932 32 1.9 32 93 0 106 27 8 22 41 1.82
143560--143622 18 3.5 18 95 0 117 33 25 12 28 1.92
143560--143628 9 7.7 9 67 6 50 33 24 13 28 1.93
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Tables: 1
The End!