NC_063655.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_063655.1 Pleione yunnanensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158802
Tables: 1
This is table 1 of 1 ( 42 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3736--3773 19 2.1 19 85 5 51 60 2 13 23 1.45
3848--3882 17 2.1 17 88 0 52 11 8 8 71 1.31
6475--6517 16 2.6 16 92 3 68 53 13 2 30 1.53
6721--6754 16 2.2 15 89 5 50 44 5 2 47 1.42
6743--6781 14 2.8 14 84 7 53 48 0 7 43 1.31
8958--9009 20 2.7 20 85 11 72 40 5 5 48 1.51
9127--9165 14 2.8 14 92 0 60 35 5 15 43 1.69
16104--16140 12 3.1 12 100 0 74 48 0 16 35 1.46
28274--28306 17 1.9 17 93 0 57 15 15 27 42 1.86
28790--28846 15 3.7 14 75 15 51 59 1 8 29 1.38
28826--28912 11 7.8 11 69 12 52 55 2 8 34 1.42
30959--30992 10 3.4 10 100 0 68 50 8 11 29 1.69
33130--33158 14 2.1 14 100 0 58 58 6 6 27 1.50
56487--56515 9 3.0 10 90 10 51 31 6 0 62 1.22
56459--56515 27 2.2 24 78 9 60 31 5 3 59 1.36
56642--56697 23 2.6 23 83 8 64 12 7 5 75 1.18
59845--59910 27 2.4 27 97 0 123 45 7 12 34 1.70
61149--61175 13 2.1 13 100 0 54 44 0 0 55 0.99
67766--67794 14 2.1 14 100 0 58 44 0 20 34 1.52
67769--67802 14 2.4 14 90 0 50 50 0 20 29 1.49
69353--69382 15 2.0 15 100 0 60 13 13 6 66 1.43
69954--69983 15 2.0 15 93 0 51 63 13 16 6 1.50
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
69990--70033 21 2.1 21 86 0 61 34 25 9 31 1.87
71266--71301 18 2.0 18 88 0 54 30 8 2 58 1.42
74224--74258 16 2.2 16 90 5 54 45 2 11 40 1.55
74267--74294 14 2.0 14 100 0 56 42 21 0 35 1.53
82640--82667 14 2.0 14 100 0 56 50 7 14 28 1.69
92483--92572 21 4.1 21 92 4 135 13 26 10 50 1.73
94934--95000 24 3.6 18 74 25 59 32 5 23 37 1.79
94941--94993 24 2.2 24 100 0 106 33 7 24 33 1.84
103039--103080 14 2.9 14 89 3 57 21 11 2 64 1.38
103043--103086 14 3.1 14 84 12 54 25 9 2 63 1.35
116260--116310 21 2.5 20 81 9 57 33 5 1 58 1.33
116362--116403 21 2.1 20 82 8 50 26 11 0 61 1.30
117268--117304 10 3.8 10 89 7 58 21 8 0 70 1.13
119151--119187 19 1.9 19 88 0 56 56 5 8 29 1.51
121550--121588 14 2.8 14 88 0 51 51 7 0 41 1.31
127208--127258 19 2.7 20 78 6 61 76 3 5 13 1.11
143001--143042 14 2.9 14 89 3 57 64 2 11 21 1.38
151088--151140 24 2.2 24 100 0 106 33 24 7 33 1.84
151081--151144 18 3.2 19 73 26 53 35 25 6 32 1.81
153509--153598 21 4.1 21 92 4 135 50 10 26 13 1.73
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Tables: 1
The End!