NC_063671.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_063671.1 Illicium difengpi voucher GXMG200224001 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 143629
Tables: 1
This is table 1 of 1 ( 42 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4744--4770 13 2.1 13 100 0 54 48 14 22 14 1.81
7530--7575 23 2.0 23 100 0 92 52 8 17 21 1.71
9367--9398 14 2.4 14 94 5 57 18 15 0 65 1.27
9694--9719 13 2.0 13 100 0 52 53 7 15 23 1.67
15997--16030 9 3.7 9 84 7 50 32 14 8 44 1.76
24091--24124 17 2.0 17 100 0 68 23 23 0 52 1.47
32374--32407 17 2.0 17 100 0 68 23 5 0 70 1.09
33019--33044 12 2.2 12 100 0 52 50 0 0 50 1.00
38101--38133 16 2.1 16 100 0 66 51 18 6 24 1.68
38103--38139 16 2.3 16 90 0 56 54 16 2 27 1.56
38367--38408 21 2.0 21 95 0 75 35 11 19 33 1.88
46436--46475 20 2.0 20 100 0 80 40 30 5 25 1.77
48019--48048 15 2.0 15 93 0 51 33 36 3 26 1.73
49377--49409 13 2.7 13 90 9 52 42 6 0 51 1.26
49411--49457 7 7.6 7 73 26 52 55 0 0 44 0.99
49415--49454 11 4.0 11 75 24 52 55 0 0 45 0.99
49411--49462 18 2.9 18 97 0 95 55 0 0 44 0.99
62322--62353 15 2.1 15 94 0 55 43 6 9 40 1.62
65283--65312 15 2.0 15 100 0 60 26 6 13 53 1.64
71425--71468 21 2.1 21 91 0 70 31 20 13 34 1.92
82693--82741 24 2.0 24 96 0 89 32 30 8 28 1.86
85567--85592 13 2.0 13 100 0 52 15 15 0 69 1.20
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
92301--92346 21 2.2 21 84 3 58 13 26 4 56 1.55
97471--97524 6 9.2 6 75 16 51 33 0 14 51 1.43
97478--97528 10 5.5 10 82 17 74 31 0 17 50 1.46
97474--97528 18 3.1 18 100 0 110 32 0 16 50 1.45
97474--97520 8 5.4 8 81 18 58 34 0 14 51 1.43
107174--107239 18 3.4 18 69 25 53 36 13 21 28 1.91
110110--110150 21 2.0 21 85 9 57 51 2 7 39 1.43
111086--111119 16 2.1 17 94 5 61 55 5 11 26 1.58
111528--111568 20 2.0 20 100 0 82 48 0 19 31 1.49
111602--111626 12 2.1 12 100 0 50 0 8 0 92 0.40
112491--112535 21 2.1 21 100 0 90 33 8 28 28 1.87
113203--113232 15 2.1 14 93 6 51 16 0 6 76 0.99
119677--119733 21 2.8 21 92 7 91 21 14 0 64 1.28
124833--124861 15 1.9 15 100 0 58 44 6 6 41 1.58
126046--126084 15 2.6 15 91 0 60 5 23 2 69 1.21
128529--128594 18 3.4 18 69 25 53 28 21 13 36 1.91
138244--138297 6 9.2 6 75 16 51 51 14 0 33 1.43
138248--138294 8 5.4 8 81 18 58 51 14 0 34 1.43
138240--138294 18 3.1 18 100 0 110 50 16 0 32 1.45
138240--138290 10 5.5 10 82 17 74 50 17 0 31 1.46
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Tables: 1
The End!