NC_063729.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_063729.1 Inula japonica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 150755
Tables: 1
This is table 1 of 1 ( 24 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
88--112 10 2.5 10 100 0 50 32 8 8 52 1.60
24835--24869 17 2.1 17 100 0 70 31 11 11 45 1.76
24897--24921 12 2.1 12 100 0 50 60 8 8 24 1.52
41545--41584 21 2.0 21 85 5 55 65 12 0 22 1.26
47132--47202 31 2.4 31 95 4 128 45 12 8 33 1.73
50373--50402 15 2.0 15 93 0 51 36 16 13 33 1.88
57253--57292 20 2.0 20 100 0 80 55 5 5 35 1.44
57483--57530 20 2.3 21 92 7 89 45 4 4 45 1.41
59201--59235 18 1.9 18 94 0 61 37 8 8 45 1.65
63732--63776 22 2.0 22 100 0 90 44 8 13 33 1.75
64086--64115 14 2.1 14 100 0 60 50 0 13 36 1.42
64886--64915 14 2.1 14 100 0 60 36 13 13 36 1.84
66249--66289 21 2.0 21 95 0 73 31 24 9 34 1.88
73550--73592 7 5.7 7 79 15 50 72 4 0 23 1.04
73553--73594 12 3.6 12 78 15 52 71 7 0 21 1.09
78862--78886 12 2.1 12 100 0 50 40 28 0 32 1.57
89623--89691 9 7.7 9 67 6 50 28 13 24 33 1.93
89629--89691 18 3.5 18 95 0 117 28 12 25 33 1.92
105314--105375 32 1.9 32 93 0 106 41 22 8 27 1.82
108080--108176 45 2.2 45 84 3 124 47 10 12 29 1.74
110828--110867 21 1.9 21 94 0 71 22 2 32 42 1.67
127826--127887 32 1.9 32 93 0 106 27 8 22 41 1.82
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
143510--143572 18 3.5 18 95 0 117 33 25 12 28 1.92
143510--143578 9 7.7 9 67 6 50 33 24 13 28 1.93
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Tables: 1
The End!