NC_063730.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_063730.1 Brucea javanica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160576
Tables: 1
This is table 1 of 1 ( 46 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4692--4742 14 3.6 14 94 0 84 41 5 7 45 1.57
4838--4866 15 1.9 15 100 0 58 27 0 17 55 1.42
5051--5085 17 2.1 17 94 0 61 42 5 28 22 1.76
9241--9285 22 2.0 24 83 16 60 26 6 0 66 1.16
9257--9290 17 2.0 17 88 0 50 29 2 0 67 1.05
30022--30059 19 2.0 19 89 0 58 18 7 18 55 1.66
30347--30392 12 4.0 12 77 11 51 43 0 0 56 0.99
30341--30386 22 2.1 22 95 0 83 36 0 0 63 0.95
30711--30739 13 2.2 13 100 0 58 13 6 0 79 0.93
33948--33981 17 2.0 17 94 0 59 52 0 20 26 1.46
34356--34395 15 2.5 16 84 12 55 40 5 5 50 1.46
34356--34402 15 2.9 17 78 12 53 42 4 6 46 1.48
34539--34565 13 2.1 13 100 0 54 29 0 7 62 1.22
38579--38604 13 2.0 13 100 0 52 61 0 0 38 0.96
38614--38661 22 2.1 23 84 3 62 52 2 10 35 1.48
44938--44986 14 3.3 15 85 8 73 57 6 6 30 1.48
48938--48968 13 2.4 13 94 0 53 51 9 0 38 1.35
49182--49225 22 2.0 22 91 4 72 31 4 11 52 1.57
54440--54466 11 2.5 11 100 0 54 11 11 14 62 1.53
59503--59552 25 2.0 25 100 0 100 36 8 20 36 1.82
61684--61721 19 2.0 19 94 0 67 60 2 10 26 1.43
65906--65947 21 2.0 22 90 4 68 52 9 9 28 1.65
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
65962--66051 26 3.5 26 98 1 173 56 3 24 15 1.54
66469--66500 16 2.0 16 100 0 64 18 18 6 56 1.62
71171--71209 21 1.9 21 94 5 71 30 25 10 33 1.89
85188--85243 31 1.9 28 82 13 69 41 5 7 46 1.54
92441--92509 21 3.3 21 83 2 86 11 23 8 56 1.62
94878--94954 9 8.6 9 69 0 55 29 10 27 32 1.90
94878--94955 18 4.3 18 98 0 147 29 10 26 33 1.89
97941--97973 16 2.1 16 100 0 66 51 6 0 42 1.26
102624--102697 18 3.9 18 72 16 60 10 10 1 77 1.07
102858--102889 16 2.0 16 100 0 64 31 12 25 31 1.92
103211--103257 25 1.9 24 91 4 76 23 6 8 61 1.48
107803--107877 38 2.0 37 89 2 114 34 21 22 21 1.97
111410--111475 32 2.1 32 97 0 123 40 24 9 25 1.84
117667--117696 14 2.1 14 100 0 60 50 20 6 23 1.71
120134--120166 11 3.0 11 95 0 57 84 0 9 6 0.76
135873--135938 32 2.1 32 97 0 123 25 9 24 40 1.84
139471--139545 38 2.0 37 89 2 114 21 22 21 34 1.97
144091--144137 25 1.9 24 91 4 76 61 8 6 23 1.48
144459--144490 16 2.0 16 100 0 64 31 25 12 31 1.92
149375--149407 16 2.1 16 100 0 66 42 0 6 51 1.26
152393--152470 18 4.3 18 98 0 147 33 26 10 29 1.89
152406--152469 9 7.1 9 70 0 56 34 28 7 29 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
154856--154909 21 2.6 21 90 0 90 59 11 20 9 1.59
154839--154907 21 3.3 21 83 2 86 56 8 23 11 1.62
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Tables: 1
The End!