NC_063821.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_063821.1 Dictamnus dasycarpus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157036
Tables: 1
This is table 1 of 1 ( 25 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5290--5327 18 2.1 18 90 0 58 55 13 5 26 1.59
7183--7212 15 2.0 15 100 0 60 20 0 13 66 1.24
29056--29099 22 2.0 22 100 0 88 40 9 9 40 1.68
31944--31975 16 2.0 16 100 0 64 31 25 0 43 1.55
37025--37077 19 2.9 19 72 16 58 54 1 3 39 1.29
50862--50892 16 1.9 16 100 0 62 32 12 25 29 1.93
51636--51661 13 2.0 13 100 0 52 30 0 15 53 1.42
59794--59842 9 5.8 9 81 13 50 42 10 8 38 1.68
59803--59851 25 2.0 24 88 4 71 44 8 6 40 1.59
66222--66247 12 2.2 12 100 0 52 61 0 7 30 1.24
66392--66443 26 2.0 26 100 0 104 19 11 42 26 1.85
68897--68935 21 1.9 21 89 5 62 33 25 10 30 1.89
85668--85713 23 2.0 23 100 0 92 47 17 8 26 1.76
89846--89920 21 3.2 24 72 12 75 10 22 9 57 1.61
92288--92359 18 4.0 18 96 0 126 29 11 27 31 1.91
100610--100647 18 2.1 18 95 0 67 23 7 5 63 1.42
108753--108814 32 1.9 32 96 0 115 38 24 9 27 1.86
111496--111540 20 2.3 20 96 3 83 60 0 15 24 1.36
114157--114193 16 2.3 16 100 0 74 59 0 18 21 1.38
119806--119850 22 2.0 22 100 0 90 35 13 13 37 1.84
132702--132763 32 1.9 32 96 0 115 27 9 24 38 1.86
140869--140906 18 2.1 18 95 0 67 63 5 7 23 1.42
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
149157--149228 18 4.0 18 96 0 126 31 27 11 29 1.91
151596--151670 21 3.2 24 72 12 75 57 9 22 10 1.61
155803--155848 23 2.0 23 100 0 92 26 8 17 47 1.76
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Tables: 1
The End!