NC_063965.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_063965.1 Arisaema heterophyllum chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 170554 Tables: 1 2 3 This is table 1 of 3 ( 307 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 78--127 25 2.0 25 100 0 100 44 16 20 20 1.87 136--164 15 2.0 15 93 6 51 27 6 0 65 1.18 197--240 16 2.6 18 85 14 74 43 0 0 56 0.99 210--281 4 18.2 4 74 8 58 34 0 0 65 0.93 203--272 16 4.2 16 80 10 77 40 0 0 60 0.97 210--508 58 5.1 58 71 17 192 38 0 0 61 0.96 288--319 13 2.5 13 94 0 55 56 0 0 43 0.99 357--544 7 26.9 7 74 16 126 35 0 0 64 0.94 476--555 24 3.2 24 78 10 72 36 0 0 63 0.94 459--600 35 4.2 35 76 17 138 38 0 0 61 0.96 546--615 35 2.0 35 85 0 95 44 0 0 55 0.99 527--623 41 2.4 40 84 3 122 40 0 0 59 0.97 2333--2370 6 6.2 6 82 17 51 36 0 0 63 0.95 2334--2370 11 3.5 11 78 14 51 37 0 0 62 0.96 2333--2372 20 2.0 20 100 0 80 40 0 0 60 0.97 2362--2386 12 2.1 12 100 0 50 60 0 0 40 0.97 5615--5661 21 2.2 21 96 0 85 34 12 21 31 1.91 6048--6075 14 2.0 14 100 0 56 50 7 7 35 1.57 6147--6215 6 11.8 6 71 22 58 55 0 0 44 0.99 6154--6221 19 3.8 19 79 18 83 55 0 0 44 0.99 6182--6262 19 3.8 21 82 17 80 55 0 0 44 0.99 6248--6283 15 2.4 15 100 0 72 66 0 0 33 0.92 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 6167--6262 10 9.1 10 70 23 56 55 0 0 44 0.99 6229--6270 21 2.0 21 90 0 66 61 0 0 38 0.96 7696--7734 16 2.4 17 91 8 71 43 28 10 17 1.82 10079--10135 29 2.0 29 83 6 73 36 3 8 50 1.50 10378--10441 15 4.1 15 75 16 58 28 0 0 71 0.86 10370--10441 10 7.7 10 74 13 55 26 0 0 73 0.83 10382--10464 7 14.5 6 74 22 65 33 0 1 65 1.01 10408--10449 13 3.5 13 81 18 63 38 0 0 61 0.96 10382--10449 23 3.1 23 83 12 81 32 0 0 67 0.91 10450--10490 11 3.6 11 90 6 64 34 0 14 51 1.43 10456--10491 12 3.1 12 96 4 65 33 0 16 50 1.46 10771--10809 11 3.4 12 86 10 55 23 0 12 64 1.28 10819--10846 13 2.2 13 100 0 56 60 0 0 39 0.97 10856--10979 6 21.0 6 68 25 61 54 0 0 45 0.99 10863--10996 19 8.1 17 74 17 61 55 0 0 44 1.05 10883--10981 11 8.2 12 78 14 89 58 0 0 41 0.98 10911--10998 22 4.0 22 83 13 94 57 0 1 40 1.06 10892--10998 46 2.3 45 80 17 121 57 0 0 41 1.05 11030--11094 9 7.8 9 70 13 50 56 1 9 32 1.40 15454--15840 12 30.2 12 69 24 108 62 0 0 37 0.96 15455--15844 23 15.7 25 72 23 212 62 0 0 37 0.95 15454--15846 10 39.0 10 70 23 160 62 0 0 37 0.95 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 15468--15842 52 6.8 53 73 21 242 62 0 0 37 0.96 15457--15846 114 3.6 107 74 18 324 62 0 0 37 0.95 15472--15850 26 14.8 25 70 23 137 63 0 0 36 0.95 17392--17441 18 2.8 17 82 14 57 70 8 0 22 1.13 30130--30170 15 2.7 15 92 0 64 31 9 9 48 1.69 30713--30746 16 2.1 16 94 0 59 50 8 0 41 1.34 30742--30780 16 2.4 16 86 4 60 28 0 17 53 1.44 30854--31444 7 82.9 8 67 19 165 40 0 0 59 0.97 30856--31453 62 10.1 60 70 19 257 40 0 0 59 0.97 30869--31451 76 7.7 76 72 18 336 40 0 0 59 0.97 31315--31446 8 16.1 8 79 15 78 38 0 0 61 0.96 31465--31505 16 2.6 16 88 7 57 19 0 7 73 1.07 31509--31534 13 2.0 13 100 0 52 46 7 15 30 1.74 35099--35142 16 2.7 16 92 3 70 52 0 0 47 1.00 35079--35175 17 5.2 18 78 15 92 51 0 0 48 1.00 35078--35182 50 1.9 54 81 16 128 54 0 0 45 0.99 35078--35180 27 3.8 26 72 20 86 53 0 0 46 1.00 35191--35235 22 2.0 22 100 0 90 22 0 22 55 1.44 35538--35565 14 2.0 14 100 0 56 28 35 0 35 1.58 40004--40034 14 2.2 14 94 0 53 22 16 12 48 1.80 47458--47490 15 2.3 15 89 5 50 15 9 6 69 1.34 50747--50811 14 4.4 14 78 21 71 35 13 0 50 1.42 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 50747--50804 8 7.6 8 75 21 54 36 13 0 50 1.42 50772--50805 17 2.0 17 100 0 68 35 17 0 47 1.48 50832--50898 19 3.4 19 86 10 82 35 0 0 64 0.94 50857--50967 13 8.8 13 69 24 60 35 0 0 64 0.94 50872--50927 29 2.0 27 89 6 85 41 0 0 58 0.98 50835--50967 21 6.7 21 78 19 108 36 0 0 63 0.94 50869--50970 8 14.0 8 69 25 66 37 0 0 62 0.95 50902--50970 19 3.6 19 78 9 77 36 0 0 63 0.94 50894--50961 31 2.1 31 81 10 75 36 0 0 63 0.95 50850--50969 25 4.6 26 78 12 104 35 0 0 64 0.94 50881--50961 6 12.7 6 73 19 58 35 0 0 64 0.94 50875--50987 25 4.4 25 79 10 86 40 0 0 59 0.97 50877--50978 21 5.6 19 75 18 67 39 0 0 60 0.97 50976--51114 16 8.5 16 68 26 87 58 0 10 31 1.31 50979--51114 26 4.2 32 70 24 97 58 0 10 31 1.32 50974--51117 57 2.5 57 85 8 177 58 0 10 31 1.32 50974--51117 59 2.5 55 82 10 148 58 0 10 31 1.32 51036--51114 13 6.5 13 69 19 64 56 0 10 32 1.32 50972--51088 19 6.4 18 76 17 109 58 0 9 32 1.30 51066--51118 26 2.0 26 100 0 106 58 0 11 30 1.33 51188--51230 19 2.3 19 91 0 68 53 0 16 30 1.43 51260--51286 13 2.1 13 100 0 54 14 0 14 70 1.17 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 51800--51843 23 1.9 23 81 9 54 25 6 0 68 1.14 51860--51923 8 7.9 8 72 20 53 56 1 6 35 1.34 51855--51891 18 2.1 18 100 0 74 56 0 5 37 1.22 51901--52215 3 108.7 3 68 23 153 63 0 0 36 0.98 51856--51937 16 5.1 16 85 8 96 56 1 4 37 1.29 51886--52878 5 202.4 5 67 24 276 61 0 0 38 0.99 52212--52253 11 3.8 11 81 12 50 52 0 0 47 1.00 52258--52296 19 2.1 19 100 0 78 51 0 0 48 1.00 52303--52344 11 3.8 11 81 12 50 47 0 0 52 1.00 52329--52373 18 2.5 18 92 0 72 33 0 0 66 0.92 52379--52447 24 2.9 24 75 10 70 68 0 0 31 0.90 52881--52914 17 2.0 17 100 0 68 29 17 0 52 1.45 52882--52918 17 2.2 17 95 0 65 29 18 0 51 1.47 52966--53016 10 4.9 10 78 7 57 29 1 1 66 1.13 52980--53022 21 2.0 21 100 0 86 27 4 4 62 1.35 53068--53171 5 19.0 5 67 23 50 39 0 6 53 1.27 53068--53110 11 3.8 11 87 6 68 37 0 2 60 1.10 53074--53119 23 2.0 24 86 4 67 39 0 6 54 1.26 53106--53212 8 15.3 7 74 20 82 38 0 11 50 1.38 53087--53155 16 4.0 16 74 20 59 39 0 8 52 1.33 53169--53213 13 3.5 13 80 14 58 33 0 13 53 1.40 53169--53213 19 2.3 20 81 11 58 33 0 13 53 1.40 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 54216--54498 9 29.7 9 67 22 93 37 1 0 61 1.03 54214--54506 39 7.7 39 70 24 157 37 1 0 61 1.03 54357--54500 43 3.4 40 75 15 71 36 0 0 63 0.94 54214--54505 68 4.5 61 68 25 99 37 1 0 61 1.03 54406--54471 2 36.5 2 73 19 56 39 0 0 60 0.97 54506--54543 16 2.4 16 90 0 58 76 0 2 21 0.91 54525--54552 12 2.3 12 100 0 56 75 0 7 17 1.03 55304--55332 14 2.1 14 100 0 58 27 20 13 37 1.91 55428--55473 15 3.1 15 84 9 67 36 0 0 63 0.95 55433--55520 26 3.4 25 76 16 90 40 0 0 59 0.98 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2 3