NC_064365.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_064365.1 Bauhinia racemosa voucher F2020012 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155501
Tables: 1
This is table 1 of 1 ( 57 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6819--6844 13 2.0 13 100 0 52 61 7 0 30 1.24
7291--7328 21 1.9 21 89 10 62 15 13 0 71 1.16
7291--7342 18 2.9 18 86 11 63 17 9 0 73 1.09
7289--7334 21 2.3 19 77 7 56 13 10 0 76 1.03
7307--7342 17 2.1 18 89 5 56 19 8 0 72 1.10
8543--8593 17 3.3 15 84 12 68 47 5 0 47 1.26
8543--8593 15 3.3 16 87 12 72 47 5 0 47 1.26
8905--8937 15 2.1 16 88 5 50 81 0 9 9 0.87
13594--13642 21 2.4 21 96 3 91 32 4 0 63 1.13
13607--13670 21 3.3 18 84 8 65 29 3 0 67 1.06
13628--13695 21 3.4 19 72 24 59 30 1 0 67 0.99
13597--13696 16 6.3 16 71 16 59 31 3 0 66 1.07
13604--13698 42 2.3 41 78 18 108 30 2 0 67 1.02
13604--13692 14 6.5 14 70 19 55 31 2 0 66 1.04
14829--14854 13 2.0 13 100 0 52 30 15 0 53 1.42
28760--28801 13 3.6 12 81 12 52 30 9 0 59 1.29
29781--29824 13 3.4 13 84 9 63 34 2 0 63 1.07
37360--37412 24 2.2 24 96 0 97 24 11 7 56 1.60
38089--38149 32 1.9 33 87 9 92 49 4 3 42 1.40
44792--44853 31 2.0 31 87 6 90 41 4 8 45 1.55
48311--48347 16 2.3 16 90 0 56 35 10 0 54 1.36
58342--58376 15 2.3 15 100 0 70 40 11 14 34 1.82
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
59657--59742 15 5.7 15 95 0 145 41 6 10 40 1.66
59655--59750 15 6.4 16 91 6 141 41 6 12 39 1.68
59979--60069 18 5.1 18 89 0 137 19 19 24 36 1.95
61541--61599 29 2.0 29 96 0 109 44 10 22 23 1.83
64799--64841 23 2.0 21 81 9 50 30 11 6 51 1.65
69622--69662 20 2.0 20 86 9 57 53 2 9 34 1.47
71664--71695 11 2.9 11 100 0 64 37 9 6 46 1.61
73098--73169 3 24.3 3 74 23 64 36 0 0 63 0.94
73095--73169 19 3.9 19 83 15 93 36 0 0 64 0.94
73099--73181 19 4.4 17 77 20 69 38 0 1 60 1.05
73369--73423 27 2.1 26 86 10 76 40 16 5 38 1.72
73500--73543 14 3.0 15 86 3 54 59 2 11 27 1.44
87812--87860 20 2.5 20 96 0 89 36 24 14 24 1.93
90623--90690 21 3.2 21 82 0 82 11 22 7 58 1.57
92995--93105 15 7.0 15 76 13 107 33 2 25 38 1.70
92995--93101 9 13.2 9 70 21 85 33 2 24 39 1.70
93007--93097 24 3.8 24 95 0 146 32 3 24 39 1.71
100508--100548 12 3.3 12 86 13 57 9 7 0 82 0.83
100503--100551 11 4.3 11 78 16 55 12 8 0 79 0.93
101042--101078 18 2.1 18 100 0 74 21 10 5 62 1.48
110854--110948 22 4.1 22 83 12 127 54 15 0 29 1.42
110854--110966 27 4.6 26 82 13 134 54 15 0 30 1.41
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
110851--110945 49 2.0 44 90 9 145 55 15 0 28 1.41
112746--112787 21 2.0 21 100 0 84 47 19 19 14 1.82
130850--130943 27 3.7 27 81 12 135 29 0 13 56 1.38
130868--130962 22 4.1 22 83 12 127 29 0 15 54 1.42
130871--130965 44 2.0 44 90 9 145 28 0 15 55 1.41
140738--140774 18 2.1 18 100 0 74 62 5 10 21 1.48
141265--141313 12 4.3 11 78 16 55 79 0 8 12 0.93
141268--141308 12 3.3 12 86 13 57 82 0 7 9 0.83
148715--148821 9 13.2 9 69 21 85 39 24 2 33 1.70
148733--148821 15 5.7 15 81 12 83 40 23 2 33 1.67
148719--148809 24 3.8 24 95 0 146 39 24 3 32 1.71
151127--151215 21 4.1 21 81 5 81 57 7 22 12 1.61
153956--154004 20 2.5 20 96 0 89 24 14 24 36 1.93
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!