NC_064965.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_064965.1 Uncaria sessilifructus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155177
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4234--4267 16 2.1 17 94 5 61 47 0 2 50 1.16
5486--5515 15 2.0 15 100 0 60 26 6 13 53 1.64
8793--8826 17 2.0 17 100 0 68 76 5 0 17 0.98
8963--9010 23 2.0 22 84 11 60 39 0 0 60 0.97
9049--9074 13 2.0 13 100 0 52 46 0 23 30 1.53
9101--9161 21 3.0 21 92 4 99 70 19 9 0 1.15
9101--9160 19 3.0 20 92 7 95 71 20 8 0 1.11
10032--10057 13 2.0 13 100 0 52 38 7 0 53 1.30
32818--32845 14 2.0 14 100 0 56 21 21 7 50 1.72
51625--51696 23 3.1 23 100 0 144 30 12 4 52 1.58
51694--51731 17 2.2 17 95 0 67 44 5 0 50 1.24
53630--53671 20 2.1 20 100 0 84 47 19 9 23 1.78
59097--59171 18 4.2 18 100 0 150 44 12 22 21 1.85
60196--60228 16 2.1 16 100 0 66 63 12 12 12 1.52
60519--60549 15 2.1 15 93 0 53 29 16 0 54 1.42
66503--66549 22 2.1 22 100 0 94 4 17 4 74 1.14
69546--69586 21 2.0 21 100 0 82 29 24 9 36 1.87
73092--73116 13 1.9 13 100 0 50 12 8 0 80 0.92
76649--76679 12 2.7 12 95 5 55 54 16 6 22 1.64
77144--77179 18 2.0 18 100 0 72 38 16 0 44 1.48
90447--90501 24 2.5 22 85 8 67 14 23 12 49 1.78
90447--90529 21 3.8 22 77 9 80 13 24 10 51 1.72
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
92891--92930 18 2.2 18 95 0 71 32 7 25 35 1.84
95578--95625 24 2.0 24 100 0 96 41 20 16 20 1.90
112023--112058 18 2.0 18 100 0 72 22 33 5 38 1.77
114582--114612 15 2.1 15 100 0 62 67 0 12 19 1.22
126985--127015 15 2.1 15 100 0 62 16 12 12 58 1.64
128211--128267 15 4.0 15 72 19 50 0 24 5 70 1.08
145222--145269 24 2.0 24 100 0 96 20 16 20 41 1.90
147917--147956 18 2.2 18 95 0 71 35 25 7 32 1.84
150329--150382 21 2.6 21 82 11 74 59 11 20 9 1.59
150318--150400 21 3.8 22 76 9 71 51 10 24 13 1.72
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Tables: 1
The End!