NC_065023.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_065023.1 Astragalus complanatus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 124131
Tables: 1
This is table 1 of 1 ( 66 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4583--4612 14 2.1 14 100 0 60 26 6 6 60 1.47
5081--5119 19 2.1 19 95 0 69 61 5 0 33 1.18
14455--14479 12 2.1 12 100 0 50 52 0 0 48 1.00
14542--14588 24 1.9 25 86 4 69 27 6 2 63 1.30
19286--19328 21 2.0 21 95 0 77 41 9 30 18 1.82
25018--25047 15 2.0 15 100 0 60 40 6 20 33 1.78
29785--29824 20 2.0 20 100 0 80 55 5 10 30 1.54
39824--39850 12 2.2 12 100 0 54 51 7 7 33 1.58
42282--42348 24 2.8 24 100 0 134 49 4 14 31 1.64
42300--42347 15 3.6 15 69 30 54 50 4 16 29 1.64
53498--53529 16 1.9 17 93 6 57 37 3 9 50 1.51
54095--54129 17 2.1 17 100 0 70 54 5 5 34 1.48
55249--55353 33 3.2 33 100 0 210 40 8 17 34 1.80
62524--62555 16 2.0 16 100 0 64 50 6 12 31 1.65
63129--63181 22 2.5 21 76 11 54 64 3 3 28 1.28
63348--63386 19 2.1 19 100 0 78 51 0 5 43 1.24
63387--63421 16 2.2 16 100 0 70 45 5 0 48 1.26
63440--63476 18 2.1 18 100 0 74 62 0 5 32 1.18
64940--64986 18 2.6 18 82 0 67 23 17 6 53 1.66
65001--65132 60 2.2 60 100 0 264 53 15 12 18 1.72
66710--66895 95 2.0 95 98 0 363 39 6 15 38 1.73
67254--67283 15 2.0 15 93 0 51 20 6 3 70 1.25
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
67270--67324 27 2.0 27 100 0 110 29 14 14 41 1.85
67534--67617 20 4.2 20 100 0 168 34 23 4 36 1.76
67818--67997 63 2.9 63 100 0 360 41 8 23 26 1.82
67955--68039 42 2.0 42 100 0 170 32 9 25 31 1.88
67892--68103 105 2.0 105 100 0 424 38 8 24 28 1.85
69010--69046 19 1.9 19 88 0 56 56 18 5 18 1.60
76584--76723 28 5.0 28 100 0 280 25 7 10 57 1.58
77842--77877 18 2.0 18 100 0 72 44 11 5 38 1.63
79782--79819 18 2.1 18 100 0 76 44 5 5 44 1.49
83318--83369 25 2.1 25 100 0 104 44 15 3 36 1.65
83397--83421 11 2.3 11 100 0 50 48 0 8 44 1.32
83413--83443 16 1.9 16 93 0 53 48 0 6 45 1.28
83453--83490 16 2.3 17 81 4 51 52 5 10 31 1.58
83559--83751 17 11.4 17 72 9 99 40 1 17 41 1.56
83535--83740 68 3.0 68 97 0 385 43 0 16 39 1.54
83723--83774 16 3.1 17 83 13 63 30 1 13 53 1.50
84236--84276 21 2.0 21 100 0 82 34 9 14 41 1.79
87920--87945 9 2.9 9 100 0 52 34 0 34 30 1.58
89837--89867 15 2.1 15 100 0 62 61 12 0 25 1.32
90600--90625 13 2.0 13 100 0 52 38 0 0 61 0.96
94690--94716 13 2.1 13 100 0 54 40 14 0 44 1.46
95041--95074 17 2.0 17 100 0 68 58 0 11 29 1.33
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
95398--95824 137 3.0 137 91 5 633 26 19 21 32 1.97
97821--97953 69 1.9 69 96 3 250 15 31 27 25 1.96
104613--104642 14 2.1 14 93 0 51 33 16 10 40 1.82
104653--104695 21 2.0 21 100 0 86 27 13 9 48 1.73
104687--104716 14 2.1 14 93 0 51 33 16 10 40 1.82
104707--104745 19 2.1 19 100 0 78 35 10 5 48 1.59
104633--104850 93 2.3 93 100 0 436 32 13 6 47 1.69
104746--104788 21 2.0 21 100 0 86 27 13 9 48 1.73
104780--104809 14 2.1 14 93 0 51 33 16 10 40 1.82
104800--104838 19 2.1 19 100 0 78 35 10 5 48 1.59
107053--107078 12 2.2 12 100 0 52 76 0 23 0 0.78
107428--107467 21 1.9 21 100 0 80 65 10 10 15 1.48
110159--110184 12 2.2 12 100 0 52 34 0 0 65 0.93
110436--110496 29 2.1 29 100 0 122 60 3 3 32 1.29
110440--110489 16 3.3 16 67 16 52 66 2 4 28 1.21
119870--119909 19 2.0 20 85 4 55 55 5 5 35 1.44
119873--119925 26 2.1 24 89 6 79 58 5 3 32 1.39
120212--120256 17 2.6 17 89 6 65 24 17 0 57 1.40
121197--121232 18 2.1 17 94 5 63 38 16 0 44 1.48
121320--121385 21 3.2 20 82 10 62 25 4 1 68 1.18
121329--121391 21 3.0 21 86 6 65 31 1 1 65 1.12
121347--121391 22 2.1 22 87 4 65 35 0 2 62 1.08
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!