NC_065155.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_065155.1 Centipeda minima chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  152340

    Tables:   1   

    This is table  1  of  1  ( 19 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  15--54                             20       2.0      20          100       0         80      25   25   5    45   1.73

  1955--1986                         12       2.6      13          85        14        50      40   0    0    59   0.97

  7376--7405                         11       2.6      12          89        10        53      43   0    6    50   1.28

  11961--11995                       17       2.1      17          94        0         61      62   8    11   17   1.52

  29920--29990                       31       2.3      30          81        13        74      52   2    7    38   1.44

  30163--30207                       23       2.0      22          86        4         63      48   24   6    20   1.73

  41798--41837                       21       2.0      21          85        5         55      65   12   0    22   1.26

  45908--45958                       24       2.1      24          100       0         102     33   11   7    47   1.69

  46433--46459                       13       2.1      13          100       0         54      48   0    0    51   1.00

  54646--54677                       16       2.0      16          100       0         64      43   25   0    31   1.55

  58999--59067                       26       2.7      26          80        8         81      46   7    4    42   1.51

  60729--60764                       18       2.0      18          100       0         72      38   11   5    44   1.63

  67790--67830                       21       2.0      21          95        0         73      31   24   9    34   1.88

  75139--75174                       17       2.1      17          89        5         54      72   8    0    19   1.10

  91163--91216                       9        6.0      9           73        0         54      29   11   25   33   1.91

  91169--91231                       18       3.5      18          97        0         117     28   9    26   34   1.88

  109599--109694                     45       2.1      45          84        3         122     46   12   12   28   1.78

  144923--144985                     18       3.5      18          97        0         117     34   26   9    28   1.88

  144938--144991                     9        6.0      9           73        0         54      33   25   11   29   1.91
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!