NC_065384.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_065384.1 Corydalis yanhusuo isolate 741360 clone 458692 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 213124
Tables: 1
This is table 1 of 1 ( 71 repeats found )
Click on indices to view alignment
Table Explanation
----------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
19939--19964 13 2.0 13 100 0 52 53 0 0 46 1.00
20163--20192 15 2.0 15 100 0 60 33 20 13 33 1.91
36753--36782 15 2.0 15 93 0 51 36 20 26 16 1.93
38104--38133 15 2.0 15 93 0 51 36 20 26 16 1.93
39455--39484 15 2.0 15 93 0 51 36 20 26 16 1.93
40806--40835 15 2.0 15 93 0 51 36 20 26 16 1.93
48594--49204 122 5.0 121 95 1 1087 27 25 23 24 2.00
60238--60263 13 2.0 13 100 0 52 46 15 7 30 1.74
72175--72226 26 2.0 26 100 0 104 46 7 11 34 1.69
73796--73823 14 2.0 14 100 0 56 57 0 21 21 1.41
74955--75043 21 4.2 21 86 0 124 35 31 10 22 1.87
77063--78207 285 4.0 285 95 2 2008 24 26 28 21 1.99
80363--80424 1 62.0 1 83 0 70 0 9 0 90 0.46
80366--80424 9 6.7 9 94 1 102 0 10 0 89 0.47
80363--80431 27 2.7 25 84 10 95 0 11 1 86 0.62
80363--80431 17 4.0 17 83 16 88 0 11 1 86 0.62
91581--91629 15 3.3 15 91 0 71 24 6 18 51 1.69
95376--95410 16 2.2 16 94 0 61 40 22 17 20 1.92
97950--98008 27 2.2 27 90 6 93 23 27 13 35 1.92
97964--98008 15 3.2 15 71 28 53 22 26 13 37 1.91
97956--98236 21 12.8 21 82 12 291 21 24 15 38 1.93
97950--98017 27 2.5 27 83 9 86 25 25 14 35 1.94
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
98350--98441 21 4.2 21 81 8 112 14 23 11 50 1.76
98371--98447 24 3.3 24 83 12 106 11 22 14 51 1.74
98345--98447 45 2.3 45 87 1 143 13 23 11 51 1.74
122901--122926 13 2.0 13 100 0 52 23 7 23 46 1.78
139239--139446 24 8.7 24 94 2 323 24 19 19 36 1.95
139745--139851 24 4.5 24 95 0 178 9 15 26 48 1.75
140128--140197 18 3.9 18 94 0 122 12 4 25 57 1.54
142326--142355 15 2.0 15 100 0 60 40 6 20 33 1.78
142973--143075 12 9.1 12 69 21 62 6 29 1 62 1.32
142988--143073 18 5.1 18 74 16 85 5 27 2 63 1.29
142976--143055 30 2.7 30 92 0 124 6 27 2 63 1.31
149627--149689 24 2.6 24 94 0 108 25 20 19 34 1.96
149870--149950 28 2.9 28 98 0 153 46 12 19 20 1.82
150303--150383 28 2.9 28 98 0 153 46 12 19 20 1.82
149729--152059 433 5.4 433 96 2 4448 34 16 18 30 1.94
150736--150816 28 2.9 28 98 0 153 46 12 19 20 1.82
151169--151249 28 2.9 28 98 0 153 46 12 19 20 1.82
151197--152118 405 2.3 405 99 0 1817 33 16 18 31 1.94
152383--152415 13 2.5 13 100 0 66 9 27 0 63 1.24
153849--153883 17 2.1 17 100 0 70 28 17 11 42 1.83
155224--155256 13 2.5 13 100 0 66 63 0 27 9 1.24
155647--156370 192 3.7 191 82 9 975 30 18 17 33 1.94
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
155521--156442 405 2.3 405 99 0 1817 31 18 16 33 1.94
156390--156470 28 2.9 28 98 0 153 20 19 12 46 1.82
156823--156903 28 2.9 28 98 0 153 20 19 12 46 1.82
157256--157336 28 2.9 28 98 0 153 20 19 12 46 1.82
157689--157769 28 2.9 28 98 0 153 20 19 12 46 1.82
155985--157910 433 4.4 433 99 0 3825 30 18 16 34 1.94
157950--158012 24 2.6 24 94 0 108 34 19 20 25 1.96
164564--164666 12 9.1 12 68 21 62 62 1 29 6 1.32
164584--164663 30 2.7 30 92 0 124 63 2 27 6 1.31
164566--164621 18 3.1 18 86 0 85 66 1 26 5 1.23
165284--165313 15 2.0 15 100 0 60 33 20 6 40 1.78
167442--167511 18 3.9 18 94 0 122 57 25 4 12 1.54
167788--167894 24 4.5 24 95 0 178 48 26 15 9 1.75
168193--168400 24 8.7 24 95 2 323 36 19 19 24 1.95
184713--184738 13 2.0 13 100 0 52 46 23 7 23 1.78
209198--209351 21 7.0 21 72 13 114 44 14 24 16 1.85
209192--209268 24 3.3 24 83 12 106 51 14 22 11 1.74
209192--209309 45 2.7 45 84 5 143 50 13 22 14 1.77
209198--209351 66 2.3 65 80 6 168 44 14 24 16 1.85
209403--209683 21 12.8 21 81 12 291 38 15 24 21 1.93
209450--209618 90 1.9 90 86 7 245 39 15 24 20 1.91
209427--209683 111 2.3 111 83 7 326 38 15 24 21 1.92
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
209622--209681 27 2.2 26 82 8 84 35 16 23 25 1.95
209631--209675 15 3.2 15 71 28 53 37 13 26 22 1.91
209631--209689 27 2.2 27 90 6 93 35 13 27 23 1.92
209568--209696 48 2.8 46 75 19 128 36 14 24 24 1.93
212229--212263 16 2.2 16 94 0 61 20 17 22 40 1.92
----------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!