NC_065501.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_065501.1 Selinum wallichianum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 148594
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6233--6286 27 2.0 27 100 0 108 29 0 18 51 1.46
6778--6807 15 2.0 15 100 0 60 60 0 20 20 1.37
27676--27704 14 2.1 14 100 0 58 34 0 6 58 1.25
28615--28650 18 2.0 18 100 0 72 50 5 5 38 1.49
37069--37099 15 2.1 15 100 0 62 67 6 0 25 1.14
47299--47341 21 2.0 22 95 4 79 37 9 0 53 1.33
47299--47341 11 4.0 11 93 6 79 37 9 0 53 1.33
47314--47354 13 3.3 13 86 6 50 41 7 2 48 1.44
62460--62486 14 1.9 14 100 0 54 40 14 7 37 1.74
64028--64052 11 2.3 11 100 0 50 44 0 0 56 0.99
68272--68320 24 2.0 24 92 0 80 46 8 4 40 1.52
68411--68451 21 2.0 21 90 0 64 26 26 12 34 1.92
70840--70869 14 2.1 14 100 0 60 33 0 0 66 0.92
74690--74726 19 1.9 19 94 0 65 54 13 8 24 1.66
82247--82280 14 2.4 14 90 5 50 38 2 2 55 1.30
88862--88929 21 3.2 21 77 8 75 11 22 8 57 1.61
89806--89849 15 2.9 15 93 0 70 27 34 13 25 1.93
91066--91131 18 3.7 18 91 0 105 30 7 27 34 1.85
92902--93213 57 5.7 57 88 11 519 52 7 7 33 1.56
93011--93100 42 2.2 42 97 2 173 53 6 6 33 1.53
92902--93213 156 2.0 156 100 0 624 52 7 7 33 1.56
92954--93157 99 2.1 99 99 0 401 52 6 6 33 1.54
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
103301--103341 20 2.0 20 100 0 82 51 14 29 4 1.63
107987--108052 32 2.1 32 97 0 123 40 24 9 25 1.84
111651--111711 12 4.8 12 80 11 77 70 1 0 27 0.97
119564--119588 12 2.1 12 100 0 50 48 0 8 44 1.32
132824--132889 32 2.1 32 97 0 123 25 9 24 40 1.84
137535--137575 20 2.0 20 100 0 82 4 29 14 51 1.63
147663--147974 57 5.7 57 83 12 458 33 7 7 52 1.56
147776--147865 42 2.2 42 97 2 173 33 6 6 53 1.53
147663--147974 156 2.0 156 100 0 624 33 7 7 52 1.56
147719--147922 99 2.1 99 99 0 401 33 6 6 52 1.54
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Tables: 1
The End!