NC_065736.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_065736.1 Caulophyllum thalictroides voucher LP1009205 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157933
Tables: 1
This is table 1 of 1 ( 58 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4--45 12 3.8 12 76 23 56 40 0 9 50 1.35
5--53 20 2.6 19 90 9 82 36 0 10 53 1.35
283--321 18 2.2 18 100 0 78 35 5 0 58 1.20
315--355 17 2.4 17 87 4 55 43 2 7 46 1.44
7361--7388 13 2.2 13 100 0 56 46 21 7 25 1.76
15183--15214 16 2.0 16 100 0 64 56 12 12 18 1.67
30055--30096 8 5.2 8 85 8 50 33 4 0 61 1.17
30084--30115 15 2.1 15 100 0 64 46 0 0 53 1.00
32410--32443 17 2.0 17 100 0 68 35 11 0 52 1.38
32416--32477 28 2.3 26 88 5 88 43 3 0 53 1.17
32422--32473 9 5.7 9 76 13 52 42 3 0 53 1.19
33132--33187 17 3.3 16 83 11 67 46 0 10 42 1.38
33782--33845 25 2.6 25 87 5 94 35 12 14 37 1.83
34322--34346 12 2.1 12 100 0 50 60 0 16 24 1.36
38109--38193 20 3.9 22 73 17 72 60 0 2 37 1.10
38138--38193 15 3.7 15 81 9 69 58 0 3 37 1.15
38119--38203 9 9.1 9 68 21 50 57 1 2 38 1.19
38254--38301 14 3.3 14 88 5 69 54 2 4 39 1.32
48427--48464 19 2.0 20 84 5 51 39 0 5 55 1.23
48454--48488 15 2.3 15 100 0 70 60 0 5 34 1.21
48503--48572 30 2.2 33 82 7 83 64 4 4 27 1.31
50318--50349 16 2.1 16 88 11 50 71 0 15 12 1.14
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
50567--50605 20 2.0 19 90 5 60 41 2 5 51 1.38
50628--50660 15 2.2 15 100 0 66 21 39 6 33 1.78
52539--52564 13 2.0 13 100 0 52 61 7 7 23 1.49
52722--52753 16 2.0 16 93 0 55 46 21 12 18 1.82
53596--53641 19 2.3 21 81 11 60 67 10 2 19 1.31
66362--66413 26 2.0 26 84 0 68 51 9 9 28 1.66
68104--68131 14 2.0 14 100 0 56 35 21 7 35 1.81
71620--71670 11 4.6 11 77 18 52 47 0 1 50 1.12
71616--71672 22 2.7 22 84 10 66 47 0 1 50 1.11
71973--72012 20 2.0 20 90 9 64 45 2 12 40 1.56
90545--90613 21 3.3 21 89 2 104 10 24 11 53 1.68
93005--93069 18 3.6 18 97 0 121 33 6 26 33 1.81
93005--93069 9 7.2 9 76 0 67 33 6 26 33 1.81
109754--109787 17 2.0 17 100 0 68 52 5 35 5 1.50
112023--112056 7 4.9 7 86 13 52 41 0 0 58 0.98
112018--112064 21 2.3 21 82 10 62 44 0 0 55 0.99
114765--114790 12 2.2 12 100 0 52 61 30 0 7 1.24
115376--115405 15 2.0 15 93 0 51 30 3 26 40 1.72
116765--116797 16 2.1 16 100 0 66 51 12 6 30 1.63
118125--118157 13 2.6 13 90 4 50 42 0 0 57 0.98
118121--118191 25 2.8 26 79 8 67 43 2 4 49 1.36
118204--118230 13 2.1 13 100 0 54 29 7 0 62 1.22
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
119956--119980 11 2.3 11 100 0 50 60 0 0 40 0.97
121896--121964 18 3.9 19 80 17 78 33 10 0 56 1.33
121912--121963 25 2.1 24 86 10 70 34 9 0 55 1.32
121899--121963 9 7.5 8 74 19 51 32 10 0 56 1.34
121912--121964 16 3.1 16 84 13 54 35 9 0 54 1.33
121923--121964 9 4.9 9 78 21 54 35 9 0 54 1.33
121992--122042 10 5.2 10 84 11 54 33 3 0 62 1.13
121998--122025 10 2.8 10 100 0 56 32 7 0 60 1.24
121989--122042 20 2.8 20 76 18 60 33 3 0 62 1.12
133813--133846 17 2.0 17 100 0 68 5 35 5 52 1.50
150539--150587 9 5.4 9 80 0 62 30 28 6 34 1.82
150531--150595 18 3.6 18 97 0 121 33 26 6 33 1.81
150531--150609 36 2.3 35 89 6 117 35 24 6 34 1.81
152987--153055 21 3.3 21 89 2 104 53 11 24 10 1.68
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Tables: 1
The End!