NC_065841.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_065841.1 Valeriana fauriei chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155302
Tables: 1
This is table 1 of 1 ( 55 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4392--4416 12 2.1 12 100 0 50 68 8 0 24 1.16
13713--13738 13 2.0 13 100 0 52 23 7 38 30 1.83
15976--16001 13 2.0 13 100 0 52 38 7 15 38 1.76
30461--30515 8 7.5 8 75 20 50 61 1 1 34 1.17
30463--30509 25 1.9 24 83 12 60 61 2 2 34 1.20
30460--30515 22 2.6 22 78 18 64 62 1 1 33 1.16
30461--30516 14 3.9 14 86 9 78 62 1 1 33 1.16
44872--44927 24 2.3 25 76 14 64 62 12 8 16 1.53
56005--56300 33 9.0 33 98 0 556 40 18 22 18 1.91
56571--56899 33 9.7 29 95 3 190 29 18 26 26 1.98
56567--56920 36 10.3 35 96 2 548 28 18 25 26 1.98
56567--56920 138 2.6 138 96 2 642 28 18 25 26 1.98
56923--56962 12 3.3 12 96 0 71 17 15 30 37 1.90
56910--56980 30 2.4 30 92 4 117 16 16 30 35 1.92
56941--56981 18 2.3 18 100 0 82 17 21 26 34 1.95
56567--56920 69 5.1 72 91 6 495 28 18 25 26 1.98
56930--56981 6 8.7 6 73 0 50 17 21 26 34 1.95
57025--57083 27 2.2 27 96 0 109 33 18 27 20 1.96
66824--66853 12 2.6 12 94 5 53 56 6 0 36 1.26
66966--67019 21 2.6 21 100 0 108 33 31 14 20 1.93
67215--67311 21 4.6 21 92 5 160 55 11 10 22 1.65
67301--67423 15 8.2 15 94 0 210 43 17 12 26 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
69168--69221 27 2.0 27 92 0 90 46 22 0 31 1.52
80383--80416 17 2.0 17 100 0 68 11 17 5 64 1.45
80385--80425 17 2.4 17 88 8 57 12 21 4 60 1.50
81165--81189 13 1.9 13 100 0 50 20 16 0 64 1.30
86837--86944 21 5.1 21 97 0 198 53 12 26 6 1.63
88193--88249 21 2.7 21 76 10 71 12 12 10 64 1.49
89819--89910 24 3.8 24 98 0 166 35 20 15 28 1.93
90246--90325 18 4.4 18 95 0 133 20 5 53 21 1.64
91190--91243 15 3.6 15 89 0 72 37 3 33 25 1.74
92653--92801 21 7.1 21 100 0 298 42 4 24 28 1.74
99732--99789 19 3.1 19 100 0 116 36 5 22 36 1.77
109026--109060 18 1.9 18 100 0 70 22 28 2 45 1.67
109828--109977 78 1.9 78 98 0 291 32 20 21 26 1.97
110065--110090 6 4.3 6 100 0 52 15 0 69 15 1.20
119604--119660 30 1.9 30 85 0 78 40 12 10 36 1.77
122485--122525 21 1.9 22 90 5 66 12 12 0 75 1.05
122551--122591 21 2.0 21 85 9 57 53 0 17 29 1.44
123799--123968 36 4.7 36 95 0 268 4 20 20 54 1.60
123804--123980 72 2.5 72 90 0 300 3 20 21 54 1.59
123804--124010 12 17.2 12 78 0 207 3 20 20 55 1.59
125542--125589 23 2.1 23 100 0 96 50 14 4 31 1.62
127965--128008 18 2.5 17 78 10 52 56 2 0 40 1.11
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
130754--130779 6 4.3 6 100 0 52 15 69 0 15 1.20
130867--131016 78 1.9 78 98 0 291 26 21 20 32 1.97
131784--131818 18 1.9 18 100 0 70 45 2 28 22 1.67
141055--141112 19 3.1 19 100 0 116 36 22 5 36 1.77
148043--148191 21 7.1 21 100 0 298 28 24 4 42 1.74
149602--149654 15 3.5 15 92 0 79 26 33 3 35 1.75
149602--149665 30 2.1 30 82 5 76 25 35 4 34 1.77
150519--150598 18 4.4 18 95 0 133 21 53 5 20 1.64
150934--151025 24 3.8 24 98 0 166 28 15 20 35 1.93
152595--152651 21 2.7 21 76 10 71 64 10 12 12 1.49
153900--154007 21 5.1 21 97 0 198 6 26 12 53 1.63
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Tables: 1
The End!